© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|032630 |
| Gene name | |
| Location | scaffold_12:1275875..1278263 |
| Strand | + |
| Gene length (bp) | 2388 |
| Transcript length (bp) | 2001 |
| Coding sequence length (bp) | 2001 |
| Protein length (aa) | 667 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08144 | CPL | CPL (NUC119) domain | 4.9E-31 | 439 | 573 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UU76|PUF6_SCHPO | Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1 | 93 | 622 | 1.0E-64 |
| sp|X1WGX5|PUM3_DANRE | Pumilio homolog 3 OS=Danio rerio GN=pum3 PE=2 SV=2 | 103 | 537 | 8.0E-55 |
| sp|Q04373|PUF6_YEAST | Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1 | 96 | 576 | 2.0E-51 |
| sp|Q562C7|PUM3_RAT | Pumilio homolog 3 OS=Rattus norvegicus GN=Pum3 PE=2 SV=1 | 116 | 549 | 7.0E-48 |
| sp|Q15397|PUM3_HUMAN | Pumilio homolog 3 OS=Homo sapiens GN=PUM3 PE=1 SV=3 | 111 | 550 | 8.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UU76|PUF6_SCHPO | Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1 | 93 | 622 | 1.0E-64 |
| sp|X1WGX5|PUM3_DANRE | Pumilio homolog 3 OS=Danio rerio GN=pum3 PE=2 SV=2 | 103 | 537 | 8.0E-55 |
| sp|Q04373|PUF6_YEAST | Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1 | 96 | 576 | 2.0E-51 |
| sp|Q562C7|PUM3_RAT | Pumilio homolog 3 OS=Rattus norvegicus GN=Pum3 PE=2 SV=1 | 116 | 549 | 7.0E-48 |
| sp|Q15397|PUM3_HUMAN | Pumilio homolog 3 OS=Homo sapiens GN=PUM3 PE=1 SV=3 | 111 | 550 | 8.0E-45 |
| sp|Q8BKS9|PUM3_MOUSE | Pumilio homolog 3 OS=Mus musculus GN=Pum3 PE=1 SV=2 | 116 | 550 | 8.0E-45 |
| sp|Q9LRZ3|PUM24_ARATH | Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1 | 98 | 464 | 1.0E-38 |
| sp|Q09622|PUF12_CAEEL | Pumilio domain-containing protein 12 OS=Caenorhabditis elegans GN=puf-12 PE=3 SV=1 | 91 | 518 | 5.0E-30 |
| sp|O61345|PENG_DROME | Protein penguin OS=Drosophila melanogaster GN=peng PE=2 SV=1 | 152 | 552 | 1.0E-25 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|032630 MVAQKNNKKRSAPTKLESKAKRRNDETEILEKTVEKKRSRPVTHTFPIVEESDSEDVGEDEDADIAMEDEPLIDQ DAMEVEGETNVPKDPNAARESHKAQKVLHEQRKAAKPHSTLLTDAKRVWSLARQQNIPSAQRQKHIADLMDVIRG KVKEIVLKHDASRIVQTIIKYGKQKERDEIALELKGKYRDLVQSRYSKFLVSKLIRLCPTHRPWILQEFQSNILR LLLHREASSVLADSFELYANAYERTFLLRDFYGKEAVLFNVTHGSAEDKERDKKGLSGILEGADEGRRNRTLAAV KENLLLVFNNSDKGAVTHAVVHRILWEYLCAISMIDDEAEQEKSRRDIFDSCQESLAEMVHTKDGSRVVREFLVR GSAKDRKQILKVLKPHIERMCLDDEAQLVLFTALDVIDDTKLLSKSLISEITTPANNIYEKPQGLRALVYLLAPR TRRHFMPAQIASLEETDAVRARTSKKDPEARADEIRKFASEALLNWITENGAKVAREPRGSLIVTEIMLYAEGDK TSATKTLVEALAVPYPSLDASTLHPVDLSWTSRMYKTLLQGGHFNRKTQSVDTTEHWNASQFASSIIDTAPRDIV IAMCTEGERNGTFLLVTLCEALLKQEDEKEVEREKLKGYFGENEWERVRSGVGKGKDLLLEKLALL* |
| Coding | >Agabi119p4|032630 ATGGTTGCGCAAAAAAATAACAAAAAACGGTCGGCACCGACGAAACTTGAGTCTAAGGCGAAAAGGCGTAACGAC GAGACAGAAATACTCGAAAAAACTGTGGAAAAGAAAAGGAGTCGACCTGTGACACATACTTTTCCTATCGTCGAA GAGTCGGACTCGGAGGATGTTGGCGAAGACGAGGATGCAGATATCGCCATGGAAGATGAGCCACTAATTGACCAG GATGCGATGGAAGTAGAAGGCGAAACAAACGTGCCGAAAGACCCAAATGCCGCCAGAGAATCCCACAAAGCGCAA AAAGTGTTGCATGAACAGCGAAAGGCGGCGAAACCCCATTCAACCTTGCTCACTGATGCCAAACGAGTATGGTCG CTCGCCCGGCAACAGAATATACCCAGCGCGCAGCGTCAGAAGCACATCGCGGATCTCATGGACGTCATACGCGGG AAAGTAAAAGAAATTGTCCTCAAGCATGATGCTAGTAGAATCGTTCAAACGATCATCAAGTACGGAAAACAAAAA GAAAGGGATGAAATCGCCCTCGAGCTCAAGGGGAAATATAGAGACCTTGTTCAGAGCCGGTATTCAAAGTTCCTT GTATCCAAACTCATTCGCCTCTGCCCTACACATCGACCTTGGATCCTACAAGAATTCCAATCCAATATCCTTCGG CTCCTCCTTCATCGTGAAGCATCTTCTGTCCTCGCTGACTCTTTCGAGCTCTATGCAAATGCTTATGAACGAACA TTTCTCTTACGGGACTTTTACGGTAAAGAAGCTGTGCTCTTTAATGTCACACACGGAAGTGCTGAGGACAAGGAG CGGGACAAGAAGGGTCTATCTGGAATTCTGGAAGGAGCAGACGAGGGTAGACGGAATCGGACGCTGGCTGCAGTC AAAGAAAACCTATTACTCGTGTTTAACAACTCGGATAAGGGAGCTGTGACTCATGCTGTTGTTCATCGTATCCTC TGGGAATACCTTTGTGCGATTAGCATGATTGACGACGAGGCAGAGCAAGAAAAATCAAGGAGAGATATCTTTGAC AGTTGTCAGGAATCATTAGCGGAGATGGTGCACACGAAAGATGGGAGTCGCGTTGTACGCGAATTTCTGGTTCGG GGCTCAGCGAAGGACCGAAAACAAATACTCAAGGTCCTCAAACCTCATATCGAACGCATGTGTCTCGATGACGAA GCACAGCTTGTTCTTTTCACTGCTCTCGATGTCATTGACGACACGAAGCTCCTCTCAAAATCTCTAATATCCGAA ATCACCACACCCGCTAACAACATCTATGAAAAACCTCAAGGCCTCCGAGCCCTTGTATATCTCCTTGCACCGCGC ACTCGAAGACACTTTATGCCTGCACAGATCGCCTCCTTGGAAGAGACAGACGCTGTTCGTGCGCGAACGAGTAAA AAAGATCCGGAAGCACGTGCAGACGAGATTCGCAAGTTTGCTAGTGAAGCTTTATTAAATTGGATAACTGAGAAT GGAGCAAAGGTTGCAAGAGAGCCGAGAGGAAGTTTGATTGTGACTGAAATTATGCTTTATGCTGAAGGAGATAAA ACAAGTGCGACGAAGACCTTGGTAGAAGCTCTAGCCGTGCCTTATCCATCTCTGGACGCGTCGACTTTGCATCCG GTTGATCTTTCATGGACATCACGGATGTACAAAACTTTACTGCAAGGTGGACACTTCAATAGAAAAACCCAGTCA GTCGATACTACCGAACATTGGAATGCTTCGCAGTTTGCAAGTAGTATCATTGATACTGCACCTCGTGATATCGTA ATCGCTATGTGCACCGAAGGAGAAAGGAATGGGACTTTTCTTCTTGTGACGTTATGTGAGGCATTATTGAAACAA GAAGATGAGAAAGAAGTGGAGAGGGAGAAGTTGAAAGGCTATTTTGGGGAAAACGAGTGGGAGAGGGTAAGGAGT GGAGTTGGTAAGGGTAAGGATCTCTTGTTGGAGAAGTTGGCGTTGTTGTGA |
| Transcript | >Agabi119p4|032630 ATGGTTGCGCAAAAAAATAACAAAAAACGGTCGGCACCGACGAAACTTGAGTCTAAGGCGAAAAGGCGTAACGAC GAGACAGAAATACTCGAAAAAACTGTGGAAAAGAAAAGGAGTCGACCTGTGACACATACTTTTCCTATCGTCGAA GAGTCGGACTCGGAGGATGTTGGCGAAGACGAGGATGCAGATATCGCCATGGAAGATGAGCCACTAATTGACCAG GATGCGATGGAAGTAGAAGGCGAAACAAACGTGCCGAAAGACCCAAATGCCGCCAGAGAATCCCACAAAGCGCAA AAAGTGTTGCATGAACAGCGAAAGGCGGCGAAACCCCATTCAACCTTGCTCACTGATGCCAAACGAGTATGGTCG CTCGCCCGGCAACAGAATATACCCAGCGCGCAGCGTCAGAAGCACATCGCGGATCTCATGGACGTCATACGCGGG AAAGTAAAAGAAATTGTCCTCAAGCATGATGCTAGTAGAATCGTTCAAACGATCATCAAGTACGGAAAACAAAAA GAAAGGGATGAAATCGCCCTCGAGCTCAAGGGGAAATATAGAGACCTTGTTCAGAGCCGGTATTCAAAGTTCCTT GTATCCAAACTCATTCGCCTCTGCCCTACACATCGACCTTGGATCCTACAAGAATTCCAATCCAATATCCTTCGG CTCCTCCTTCATCGTGAAGCATCTTCTGTCCTCGCTGACTCTTTCGAGCTCTATGCAAATGCTTATGAACGAACA TTTCTCTTACGGGACTTTTACGGTAAAGAAGCTGTGCTCTTTAATGTCACACACGGAAGTGCTGAGGACAAGGAG CGGGACAAGAAGGGTCTATCTGGAATTCTGGAAGGAGCAGACGAGGGTAGACGGAATCGGACGCTGGCTGCAGTC AAAGAAAACCTATTACTCGTGTTTAACAACTCGGATAAGGGAGCTGTGACTCATGCTGTTGTTCATCGTATCCTC TGGGAATACCTTTGTGCGATTAGCATGATTGACGACGAGGCAGAGCAAGAAAAATCAAGGAGAGATATCTTTGAC AGTTGTCAGGAATCATTAGCGGAGATGGTGCACACGAAAGATGGGAGTCGCGTTGTACGCGAATTTCTGGTTCGG GGCTCAGCGAAGGACCGAAAACAAATACTCAAGGTCCTCAAACCTCATATCGAACGCATGTGTCTCGATGACGAA GCACAGCTTGTTCTTTTCACTGCTCTCGATGTCATTGACGACACGAAGCTCCTCTCAAAATCTCTAATATCCGAA ATCACCACACCCGCTAACAACATCTATGAAAAACCTCAAGGCCTCCGAGCCCTTGTATATCTCCTTGCACCGCGC ACTCGAAGACACTTTATGCCTGCACAGATCGCCTCCTTGGAAGAGACAGACGCTGTTCGTGCGCGAACGAGTAAA AAAGATCCGGAAGCACGTGCAGACGAGATTCGCAAGTTTGCTAGTGAAGCTTTATTAAATTGGATAACTGAGAAT GGAGCAAAGGTTGCAAGAGAGCCGAGAGGAAGTTTGATTGTGACTGAAATTATGCTTTATGCTGAAGGAGATAAA ACAAGTGCGACGAAGACCTTGGTAGAAGCTCTAGCCGTGCCTTATCCATCTCTGGACGCGTCGACTTTGCATCCG GTTGATCTTTCATGGACATCACGGATGTACAAAACTTTACTGCAAGGTGGACACTTCAATAGAAAAACCCAGTCA GTCGATACTACCGAACATTGGAATGCTTCGCAGTTTGCAAGTAGTATCATTGATACTGCACCTCGTGATATCGTA ATCGCTATGTGCACCGAAGGAGAAAGGAATGGGACTTTTCTTCTTGTGACGTTATGTGAGGCATTATTGAAACAA GAAGATGAGAAAGAAGTGGAGAGGGAGAAGTTGAAAGGCTATTTTGGGGAAAACGAGTGGGAGAGGGTAAGGAGT GGAGTTGGTAAGGGTAAGGATCTCTTGTTGGAGAAGTTGGCGTTGTTGTGA |
| Gene | >Agabi119p4|032630 ATGGTTGCGCAAAAAAATAACAAAAAACGGTCGGCACCGACGAAACTTGAGTCTAAGGCGAAAAGGCGTAACGAC GAGACAGAAATACTCGAAAAAACTGTGGAAAAGAAAAGGAGTCGACCTGTGACACATACTTTTCCTATCGTCGAA GAGTCGGACTCGGAGGATGTTGGCGAAGACGAGGATGCAGATATCGCCATGGAAGATGAGCCACTAATTGACCAG GATGCGATGGAAGTAGAAGGCGAAACAAACGTGCCGAAAGACCCAAATGGTGTGTTGCATCCATAATTTCACGGA ATATCCAATAATCAATACACAAAGCCGCCAGAGAATCCCACAAAGCGCAAAAAGTGTTGCATGAACAGCGAAAGG CGGCGAAACCCCATTCAACCTTGCTCACTGATGCCAAACGAGTATGGTCGCTCGCCCGGCAACAGAATATACCCA GCGCGCAGCGTCAGAAGCACATCGCGGATCTCATGGACGTCATACGCGGGAAAGTAAAAGAAATTGTCCTCAAGC ATGATGCTAGTAGAATCGTTCAAACGATCATCAAGTACGGAAAACAAAAAGAAAGGGATGAAATCGCCCTCGAGC TCAAGGGGAAATATAGAGACCTTGTTCAGAGCCGGTATTCAAAGGTGTGTCTAGCGTCCCACCAACAATCAAATT CATAGCTGAAAAAAAATCAGTTCCTTGTATCCAAACTCATTCGCCTCTGCCCTACACATCGACCTTGGATCCTAC AAGAATTCCAATCCAATATCCTTCGGCTCCTCCTTCATCGTGAAGCATCTTCTGTCCTCGCTGACTCTTTCGAGC TCTATGCAAATGCTTATGAACGAACATTTCTCTTACGGGACTTTTACGGTAAAGAAGCTGTGCTCTTTAATGTCA CACACGGAAGTGCTGAGGACAAGGAGCGGGACAAGAAGGGTCTATCTGGAATTCTGGAAGGAGCAGACGAGGGTA GACGGAATCGGACGCTGGCTGCAGTCAAAGAAAACCTATTACTCGTGTATGTCCAGATGACATGATTTTCTGCCC CCCCGAAACTTAACGGAGTTTTAGGTTTAACAACTCGGATAAGGGAGCTGTGACTCATGCTGTTGTTCATCGTAT CCTCTGGGAATACCTTTGTGCGATTAGCATGATTGACGACGAGGCAGAGCAAGAAAAATCAAGGAGAGATATCTT TGACAGGTATTGTACGATCGCTGATTTTTCACGTAACGAAACTCATAGTATTAGTTGTCAGGAATCATTAGCGGA GATGGTGCACACGAAAGATGGGAGTCGCGTTGTACGCGAATTTCTGGTTCGGGGCTCAGCGAAGGTTCGTCACTA GCCCTTCTCACCGTGACGCATGATATAGATATTCTTGGTCTTACAGGACCGAAAACAAATACTCAAGGTCCTCAA ACCTCATATCGAACGCATGTGTCTCGATGACGAAGCACAGCTTGTTCTTTTCACTGCTCTCGATGTCATTGAGTA CGTCAAAAACATAATCCATCAAGTTCTGCTTTCGTTCAGCCTGATCTTACTATGTCTATCTTAGCGACACGAAGC TCCTCTCAAAATCTCTAATATCCGAAATCACCACACCCGCTAACAACATCTATGAAAAACCTCAAGGCCTCCGAG CCCTTGTATATCTCCTTGCACCGCGCACTCGAAGACACTTTATGCCTGCACAGATCGCCTCCTTGGAAGAGACAG ACGCTGTTCGTGCGCGAACGAGTAAAAAAGATCCGGAAGCACGTGCAGACGAGATTCGCAAGTTTGCTAGTGAAG CTTTATTAAATTGGATAACTGAGAATGGAGCAAAGGTTGCAAGAGAGCCGAGAGGAAGTTTGATTGTGACTGAAA TTATGCTTTATGCTGAAGGAGGTCAGGCGTTACTGTTTATTCATTATCCTTTACAAGGCTGATCGCGTACTCTGG GATGCAGATAAAACAAGTGCGACGAAGACCTTGGTAGAAGCTCTAGCCGTGCCTTATCCATCTCTGGACGCGTCG ACTTTGCATCCGGTTGATCTTTCATGGACATCACGGATGTACAAAACTTTACTGCAAGGTGGACACTTCAATAGA AAAACCCAGTCAGTCGATACTACCGAACATTGGAATGCTTCGCAGTTTGCAAGTAGTATCATTGATACTGCACCT CGTGATATCGTAATCGCTATGTGCACCGAAGGAGAAAGGAATGGGACTTTTCTTCTTGTGACGTTATGTGAGGCA TTATTGAAACAAGAAGATGAGAAAGAAGTGGAGAGGGAGAAGTTGAAAGGCTATTTTGGGGAAAACGAGTGGGAG AGGGTAAGGAGTGGAGTTGGTAAGGGTAAGGATCTCTTGTTGGAGAAGTTGGCGTTGTTGTGA |