Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|031920
Gene name
Location	scaffold_12:1087908..1089773
Strand	-
Gene length (bp)	1865
Transcript length (bp)	1584
Coding sequence length (bp)	1584
Protein length (aa)	528

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03105	SPX	SPX domain	3.9E-35	1	382
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.7E-07	429	467
PF13920	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2.7E-07	426	469
PF13639	zf-RING_2	Ring finger domain	1.2E-06	428	468

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5A1M4\|TRY3_CANAL	Transcriptional regulator of yeast form adherence 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRY3 PE=2 SV=1	1	527	1.0E-63
sp\|O14212\|YDT7_SCHPO	Uncharacterized RING finger protein C6B12.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6B12.07c PE=3 SV=2	1	527	4.0E-54
sp\|Q9D7D1\|RN225_MOUSE	RING finger protein 225 OS=Mus musculus GN=Rnf225 PE=2 SV=1	419	477	3.0E-07
sp\|M0QZC1\|RN225_HUMAN	RING finger protein 225 OS=Homo sapiens GN=RNF225 PE=3 SV=2	419	478	7.0E-07
sp\|Q0IIM1\|RN168_BOVIN	E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2 SV=2	421	510	2.0E-06

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5A1M4\|TRY3_CANAL	Transcriptional regulator of yeast form adherence 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRY3 PE=2 SV=1	1	527	1.0E-63
sp\|O14212\|YDT7_SCHPO	Uncharacterized RING finger protein C6B12.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6B12.07c PE=3 SV=2	1	527	4.0E-54
sp\|Q9D7D1\|RN225_MOUSE	RING finger protein 225 OS=Mus musculus GN=Rnf225 PE=2 SV=1	419	477	3.0E-07
sp\|M0QZC1\|RN225_HUMAN	RING finger protein 225 OS=Homo sapiens GN=RNF225 PE=3 SV=2	419	478	7.0E-07
sp\|Q0IIM1\|RN168_BOVIN	E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2 SV=2	421	510	2.0E-06
sp\|Q9CWS1\|RN135_MOUSE	E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2 SV=1	418	468	2.0E-06

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GO

GO Term	Description	Terminal node
GO:0046872	metal ion binding	Yes
GO:0043169	cation binding	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0003674	molecular_function	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 70	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|031920 MHFSKTYAQVLEGLPPELKENAIQYRQLKKLINTVVRELSSFGLSPDLLHQLLEAQERDSFAGLEGSTCSACDSS LTVNLPLDEGTSQPGMCFPKAVYEFVEGSSKIEPQLRIPLETLRELASSLRAGTRVLEEAAEGNAAHARDEDSEL PGAEPLNRLIPPGNTLLWSLQNPGSNTEGSLQLDTPLNSSSCEVIIPLVSDAQFFELLRTTLEHASNHLQSVQKG FLHTLTTLSRMIADSARPASSSRTGVRGSFHALSPLKDNVSSIHINGRLSKSDLYVWREIFQLYVEAEVFESVNE SDRGERSLEESERRLQMFATQVTQRGLVAEGKFKLPQSRTALEAFLQLNLGILNIKKFQLANSEAIRKILKKHTK RTALSLPLDGFSSNTPPQLALIPQTRSFSLPHALVQAIGETLLPIIPHLDDYSCLICTNLAFKPIRLDCGHLFCV RCLVKMQKRGNGDCPLCRASSVLVADRSNVDWALMNFMQDWFPLEAKAKLKANEKEVLDEQLREMGIDPTDSHCI IM*
Coding	>Agabi119p4\|031920 ATGCACTTTTCCAAAACATATGCTCAAGTTCTCGAAGGCCTCCCGCCGGAACTCAAGGAAAATGCCATCCAGTAC CGCCAGCTGAAAAAGTTGATCAACACCGTTGTAAGGGAGCTTTCTTCCTTCGGCCTGAGTCCGGATCTACTCCAC CAGCTTCTCGAAGCGCAGGAAAGGGATTCGTTTGCCGGTCTCGAGGGTTCAACGTGTAGTGCATGTGACTCGTCC TTGACTGTCAATTTACCGCTCGATGAGGGAACCAGTCAACCGGGGATGTGTTTCCCAAAGGCGGTGTACGAGTTT GTTGAGGGCTCGTCAAAGATCGAGCCACAGCTTCGGATACCGTTAGAGACCCTGAGGGAGTTGGCCAGCTCTCTG CGTGCTGGGACAAGAGTGTTGGAAGAGGCGGCAGAGGGCAATGCTGCTCATGCAAGAGACGAGGATTCTGAATTG CCTGGCGCGGAGCCTTTAAATCGCCTTATACCACCCGGAAACACTCTATTGTGGTCGTTGCAGAATCCTGGGTCA AATACCGAAGGCTCATTACAACTCGACACGCCCTTGAATTCTTCTTCTTGTGAAGTCATCATACCATTGGTATCC GACGCCCAATTCTTTGAATTGCTTCGTACTACTCTCGAACATGCTTCAAACCATCTCCAATCTGTGCAAAAAGGT TTTTTGCACACTTTGACGACACTTTCGCGAATGATCGCTGACTCAGCGCGACCTGCTAGCTCGTCTCGTACAGGC GTTCGCGGCAGCTTTCATGCTCTTTCGCCTCTGAAGGATAACGTTTCGAGCATTCATATAAACGGTCGTTTGTCA AAGAGTGACCTTTATGTGTGGAGAGAGATATTTCAACTCTACGTCGAGGCCGAGGTATTCGAGAGCGTGAATGAA AGTGATAGAGGAGAACGTAGTCTTGAGGAGAGCGAACGCCGGTTACAGATGTTCGCGACTCAAGTAACTCAAAGA GGGTTAGTTGCGGAAGGAAAATTCAAGCTTCCGCAGAGTCGAACTGCTCTCGAAGCATTTTTACAGCTAAATCTT GGTATCCTCAACATTAAGAAGTTTCAATTGGCGAATTCGGAAGCTATCCGTAAAATCTTAAAGAAGCATACAAAA CGGACTGCTCTTTCACTGCCACTCGATGGCTTCTCCAGTAATACTCCCCCTCAACTGGCTCTGATACCCCAAACT CGCTCCTTTTCTCTCCCCCACGCTCTCGTTCAAGCTATTGGCGAGACATTATTGCCCATCATACCCCATCTAGAC GATTATTCATGTTTGATCTGCACGAATCTAGCGTTTAAGCCTATAAGACTTGATTGTGGGCATTTGTTCTGTGTA CGGTGTCTTGTCAAGATGCAAAAGAGGGGTAATGGCGATTGTCCGCTGTGTAGAGCATCGTCTGTATTGGTTGCT GATAGATCTAATGTCGATTGGGCATTAATGAATTTCATGCAAGATTGGTTTCCTTTGGAGGCGAAAGCAAAATTG AAGGCTAATGAGAAGGAAGTGTTGGATGAACAACTTCGCGAAATGGGTATTGATCCAACTGATTCACATTGCATC ATAATGTAG
Transcript	>Agabi119p4\|031920 ATGCACTTTTCCAAAACATATGCTCAAGTTCTCGAAGGCCTCCCGCCGGAACTCAAGGAAAATGCCATCCAGTAC CGCCAGCTGAAAAAGTTGATCAACACCGTTGTAAGGGAGCTTTCTTCCTTCGGCCTGAGTCCGGATCTACTCCAC CAGCTTCTCGAAGCGCAGGAAAGGGATTCGTTTGCCGGTCTCGAGGGTTCAACGTGTAGTGCATGTGACTCGTCC TTGACTGTCAATTTACCGCTCGATGAGGGAACCAGTCAACCGGGGATGTGTTTCCCAAAGGCGGTGTACGAGTTT GTTGAGGGCTCGTCAAAGATCGAGCCACAGCTTCGGATACCGTTAGAGACCCTGAGGGAGTTGGCCAGCTCTCTG CGTGCTGGGACAAGAGTGTTGGAAGAGGCGGCAGAGGGCAATGCTGCTCATGCAAGAGACGAGGATTCTGAATTG CCTGGCGCGGAGCCTTTAAATCGCCTTATACCACCCGGAAACACTCTATTGTGGTCGTTGCAGAATCCTGGGTCA AATACCGAAGGCTCATTACAACTCGACACGCCCTTGAATTCTTCTTCTTGTGAAGTCATCATACCATTGGTATCC GACGCCCAATTCTTTGAATTGCTTCGTACTACTCTCGAACATGCTTCAAACCATCTCCAATCTGTGCAAAAAGGT TTTTTGCACACTTTGACGACACTTTCGCGAATGATCGCTGACTCAGCGCGACCTGCTAGCTCGTCTCGTACAGGC GTTCGCGGCAGCTTTCATGCTCTTTCGCCTCTGAAGGATAACGTTTCGAGCATTCATATAAACGGTCGTTTGTCA AAGAGTGACCTTTATGTGTGGAGAGAGATATTTCAACTCTACGTCGAGGCCGAGGTATTCGAGAGCGTGAATGAA AGTGATAGAGGAGAACGTAGTCTTGAGGAGAGCGAACGCCGGTTACAGATGTTCGCGACTCAAGTAACTCAAAGA GGGTTAGTTGCGGAAGGAAAATTCAAGCTTCCGCAGAGTCGAACTGCTCTCGAAGCATTTTTACAGCTAAATCTT GGTATCCTCAACATTAAGAAGTTTCAATTGGCGAATTCGGAAGCTATCCGTAAAATCTTAAAGAAGCATACAAAA CGGACTGCTCTTTCACTGCCACTCGATGGCTTCTCCAGTAATACTCCCCCTCAACTGGCTCTGATACCCCAAACT CGCTCCTTTTCTCTCCCCCACGCTCTCGTTCAAGCTATTGGCGAGACATTATTGCCCATCATACCCCATCTAGAC GATTATTCATGTTTGATCTGCACGAATCTAGCGTTTAAGCCTATAAGACTTGATTGTGGGCATTTGTTCTGTGTA CGGTGTCTTGTCAAGATGCAAAAGAGGGGTAATGGCGATTGTCCGCTGTGTAGAGCATCGTCTGTATTGGTTGCT GATAGATCTAATGTCGATTGGGCATTAATGAATTTCATGCAAGATTGGTTTCCTTTGGAGGCGAAAGCAAAATTG AAGGCTAATGAGAAGGAAGTGTTGGATGAACAACTTCGCGAAATGGGTATTGATCCAACTGATTCACATTGCATC ATAATGTAG
Gene	>Agabi119p4\|031920 ATGCACTTTTCCAAAACATATGCTCAAGTTCTCGAAGGCCTCCCGCCGGAACTCAAGGAAAATGCCATCCAGTAC CGCCAGGTATGCTTCATGCTCTTTATCTTGTCGTCGCGGGCTAACAGCAAACTTAGCTGAAAAAGTTGATCAACA CCGTTGTAAGGGAGCTTTCTTCCTTCGGCCTGAGTCCGGATCTACTCCACCAGCTTCTCGAAGCGCAGGAAAGGG ATTCGTTTGCCGGTCTCGAGGGTTCAACGTGTAGTGCATGTGACTCGTCCTTGACTGTCAATTTACCGCTCGATG AGGGAACCAGTCAACCGGGGATGTGTTTCCCAAAGGCGGTGTACGAGTTTGTTGAGGGCTCGTCAAAGATCGAGC CACAGCTTCGGATACCGTTAGAGACCCTGAGGGAGTTGGCCAGCTCTCTGCGTGCTGGGACAAGAGTGTTGGAAG AGGCGGCAGAGGGCAATGCTGCTCATGCAAGAGACGAGGATTCTGAATTGCCTGGCGCGGAGCCTTTAAATCGCC TTATACCACCCGGAAACACTCTATTGTGGTCGTTGCAGAATCCTGGGTCAAAGTGAGCTTCGTTTCAGTCATTAA TTTCTATTGAAAGCTAATCTACCCTGTCAATCAAGTACCGAAGGCTCATTACAACTCGACACGCCCTTGAATTCT TCTTCTTGTGAAGTCATCATACCATTGGTATCCGACGCCCAATTCTTTGAATTGCTTCGTACTACTCTCGAACAT GCTTCAAACCATCTCCAATCTGTGCAAAAAGGTTTTTTGCACACTTTGACGACACTTTCGCGAATGATCGCTGAC TCAGCGCGACCTGCTAGCTCGTCTCGTACAGGCGTTCGCGGCAGCTTTCATGCTCTTTCGCCTCTGAAGGATAAC GTTTCGAGCATTCATATAAACGGTCGTTTGTCAAAGGTGTGTAGGCTATTCGCACAATGCTCTTCCGTCCTGCTT AATGTAATCTTTTAGAGTGACCTTTATGTGTGGAGAGAGATATTTCAACTCTACGTCGAGGCCGAGGTATTCGAG AGCGTGAATGAAAGTGATAGAGGAGAACGTAGTCTTGAGGAGAGCGAACGCCGGTTACAGATGTTCGCGACTCAA GTAACTCAAAGAGGGTTAGTTGCGGAAGGAAAATTCAAGCTTCCGCAGAGTCGAACTGCTCTCGAAGCATTTTTA CAGCTAAATCTTGGTATCCTCAACATTAAGAAGGTACGTGCACCAACATTTTTTGATCTTACCAGATATCTGACT GGAGCACCAGTTTCAATTGGCGAATTCGGAAGCTATCCGTAAAATCTTAAAGAAGCATACAAAACGGACTGCTCT TTCACTGCCACTCGATGGCTTCTCCAGTAATACTCCCCCTCAACTGGCTCTGATACCCCAAACTCGCTCCTTTTC TCTCCCCCACGCTCTCGTTCAAGCTATTGGCGAGACATTATTGCCCATCATACCCCATCTAGACGATTATTCATG TTTGATCTGCACGAATCTAGCGTTTAAGCCTATAAGACTTGATTGTGGGCATTTGTTCTGTGTACGGTGTCTTGT CAAGATGCAAAAGAGGGGTAATGGCGATTGTCCGCTGTGTAGAGCATCGTCTGTATTGGTTGCTGATAGATGTAA GTAAGATTTTACCTCTGCGTTTGGCAGTTGATTGACTCTTTTTTTACCCCTTCCCACTTGAAGCTAATGTCGATT GGGCATTAATGAATTTCATGCAAGATTGGTTTCCTTTGGAGGCGAAAGCAAAATTGAAGGCTAATGAGAAGGAAG TGTTGGATGAACAACTTCGCGAAATGGGTATTGATCCAACTGATTCACATTGCATCATAATGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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