© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|026360 |
| Gene name | |
| Location | scaffold_11:1318647..1320705 |
| Strand | - |
| Gene length (bp) | 2058 |
| Transcript length (bp) | 1653 |
| Coding sequence length (bp) | 1653 |
| Protein length (aa) | 551 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 2.9E-33 | 20 | 350 |
| PF02535 | Zip | ZIP Zinc transporter | 6.6E-09 | 386 | 471 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 9 | 455 | 3.0E-26 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 293 | 453 | 2.0E-14 |
| sp|O81123|ZIP1_ARATH | Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 | 293 | 452 | 9.0E-14 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 277 | 452 | 4.0E-13 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 273 | 453 | 4.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 9 | 455 | 3.0E-26 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 293 | 453 | 2.0E-14 |
| sp|O81123|ZIP1_ARATH | Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 | 293 | 452 | 9.0E-14 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 277 | 452 | 4.0E-13 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 273 | 453 | 4.0E-13 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 7 | 123 | 7.0E-13 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 250 | 451 | 2.0E-12 |
| sp|Q8W246|ZIP7_ARATH | Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1 | 272 | 459 | 8.0E-12 |
| sp|O64738|ZIP6_ARATH | Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=3 SV=1 | 268 | 479 | 2.0E-11 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 293 | 452 | 2.0E-11 |
| sp|O23039|ZIP5_ARATH | Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1 | 280 | 452 | 4.0E-11 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 250 | 458 | 9.0E-11 |
| sp|Q6L8F9|ZIP6_ORYSJ | Zinc transporter 6 OS=Oryza sativa subsp. japonica GN=ZIP6 PE=2 SV=1 | 292 | 451 | 2.0E-10 |
| sp|Q5Z653|ZIP10_ORYSJ | Zinc transporter 10 OS=Oryza sativa subsp. japonica GN=ZIP10 PE=3 SV=2 | 294 | 452 | 3.0E-10 |
| sp|Q6L8F7|ZIP7_ORYSJ | Zinc transporter 7 OS=Oryza sativa subsp. japonica GN=ZIP7 PE=2 SV=1 | 279 | 463 | 4.0E-10 |
| sp|Q7XLD4|ZIP3_ORYSJ | Zinc transporter 3 OS=Oryza sativa subsp. japonica GN=ZIP3 PE=1 SV=2 | 301 | 451 | 9.0E-10 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 12 | 141 | 1.0E-07 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 20 | 120 | 2.0E-07 |
| sp|O82643|ZIP9_ARATH | Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1 | 294 | 452 | 3.0E-07 |
| sp|O23039|ZIP5_ARATH | Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1 | 10 | 128 | 4.0E-07 |
| sp|Q9FIS2|ZIP12_ARATH | Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=3 SV=1 | 284 | 452 | 1.0E-06 |
| sp|O81123|ZIP1_ARATH | Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 | 15 | 123 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 22 | 44 | 22 |
| 2 | 51 | 73 | 22 |
| 3 | 93 | 115 | 22 |
| 4 | 297 | 319 | 22 |
| 5 | 389 | 411 | 22 |
| 6 | 424 | 446 | 22 |
| 7 | 530 | 549 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|026360 MPFHPPFMSEAHNGQAAEPRIQVMAIVLVISLLAVSFPGISMLVPRFRIPGIFFFIGKHFGTGVILATAFIHLLQ DSFGALQKGPVKEHFGNIGDYTGLIILASLLSIFLIEYFCNSYVEHLHSEPSQPSSPEKSRESSIERSPHPAFSP STAVTLQVPSLSTSTSQRGRLETSESTPLLHHHPRIAPPSTHPQHNHAHHVHLPALVTQDGASVVPFEVLTNSPR ILKMRGCTCAVSRDRSRSRPRLASTISVTSPTLDLSRGRNERVGRTIDREEEMEGDEEQDEKPLIGRRRQVIGLL VLQLGIMIHSLVIGLTLAIAAGSDFTSLTVAVVFHQLFEGLSLGIRIAALPPPPSTDVELSALGMKAQSSVKKGF FQGLLGAGWTLKVIMAILFGITAPAGMGIGMIAFKVGKEKEGIELARMYLIQGLMSAVSAGMLIYASTVEMIAGD FVFGDVEGHSHHDHGHSHDLSALGNDKSRRSDRSRDDGSGGVSGDEEMGANDLTDGDDGDDDNHHLHDLPHRHGK LRKKLLAVLSLLAGVGGMVLIGLGE* |
| Coding | >Agabi119p4|026360 ATGCCTTTCCACCCACCTTTCATGTCCGAAGCTCACAATGGCCAGGCAGCGGAGCCTCGTATTCAGGTTATGGCC ATCGTCCTCGTCATCTCTCTCCTCGCCGTATCCTTTCCTGGCATCTCCATGCTAGTCCCCCGTTTTCGCATACCT GGCATCTTTTTCTTCATTGGAAAACACTTTGGTACAGGTGTTATCCTGGCCACTGCGTTTATCCATTTGCTTCAA GACTCTTTTGGAGCCCTTCAAAAAGGCCCGGTCAAAGAGCATTTTGGTAACATCGGAGACTATACAGGCCTCATC ATTCTTGCATCTCTCCTCAGCATTTTCCTTATTGAATATTTTTGCAATTCTTATGTTGAACATCTACACTCCGAA CCGTCCCAACCGTCTTCACCCGAAAAATCTCGAGAATCTTCCATAGAGCGTTCACCGCATCCCGCTTTCTCGCCC TCGACAGCAGTAACATTACAGGTTCCTTCCTTGTCCACTTCGACATCGCAGCGAGGTAGATTAGAGACTAGTGAG AGTACCCCACTTTTACATCATCACCCTCGTATCGCACCACCCTCCACTCATCCCCAGCACAATCATGCGCACCAC GTCCATTTACCTGCTCTCGTGACCCAAGATGGAGCAAGTGTGGTTCCATTTGAGGTATTGACGAATTCACCTCGG ATCCTCAAGATGCGAGGCTGCACATGTGCGGTTTCCCGCGATCGTTCAAGATCTCGTCCCCGTCTCGCTAGCACT ATAAGTGTCACTTCGCCGACTTTGGATCTAAGCCGTGGTAGAAATGAGAGGGTTGGGCGGACCATAGATCGGGAG GAGGAGATGGAAGGGGACGAAGAACAAGACGAAAAACCATTAATCGGAAGAAGGCGACAAGTCATTGGATTATTG GTTCTGCAACTAGGAATTATGATCCATTCACTTGTCATAGGCCTAACTTTGGCGATAGCGGCCGGTAGTGATTTT ACGTCGCTCACGGTTGCTGTGGTGTTTCACCAACTATTCGAAGGCTTATCGCTTGGGATCCGTATTGCCGCACTT CCACCACCGCCTTCTACCGATGTTGAACTCTCCGCTCTTGGAATGAAGGCGCAGTCCAGTGTGAAGAAAGGGTTC TTCCAAGGTTTGCTTGGTGCCGGATGGACGTTGAAGGTCATTATGGCTATTCTATTTGGTATAACGGCGCCAGCT GGGATGGGTATAGGAATGATTGCGTTCAAAGTTGGAAAGGAGAAGGAAGGCATTGAACTTGCTCGAATGTATCTG ATCCAAGGACTGATGTCTGCTGTATCAGCCGGAATGCTGATATATGCATCCACCGTGGAGATGATTGCGGGAGAT TTCGTCTTTGGAGATGTTGAAGGACATAGCCATCATGATCATGGCCATTCGCATGATTTATCTGCACTGGGGAAT GATAAATCGAGAAGAAGTGATCGTTCTCGAGACGATGGTAGTGGTGGAGTTTCGGGGGATGAAGAGATGGGCGCA AATGACCTGACTGATGGAGATGATGGTGACGATGATAATCATCATCTACATGACCTACCGCATCGTCATGGGAAG CTTAGAAAGAAGTTGTTGGCGGTATTGAGTCTTCTGGCTGGTGTCGGAGGAATGGTTTTGATTGGATTGGGAGAG TAA |
| Transcript | >Agabi119p4|026360 ATGCCTTTCCACCCACCTTTCATGTCCGAAGCTCACAATGGCCAGGCAGCGGAGCCTCGTATTCAGGTTATGGCC ATCGTCCTCGTCATCTCTCTCCTCGCCGTATCCTTTCCTGGCATCTCCATGCTAGTCCCCCGTTTTCGCATACCT GGCATCTTTTTCTTCATTGGAAAACACTTTGGTACAGGTGTTATCCTGGCCACTGCGTTTATCCATTTGCTTCAA GACTCTTTTGGAGCCCTTCAAAAAGGCCCGGTCAAAGAGCATTTTGGTAACATCGGAGACTATACAGGCCTCATC ATTCTTGCATCTCTCCTCAGCATTTTCCTTATTGAATATTTTTGCAATTCTTATGTTGAACATCTACACTCCGAA CCGTCCCAACCGTCTTCACCCGAAAAATCTCGAGAATCTTCCATAGAGCGTTCACCGCATCCCGCTTTCTCGCCC TCGACAGCAGTAACATTACAGGTTCCTTCCTTGTCCACTTCGACATCGCAGCGAGGTAGATTAGAGACTAGTGAG AGTACCCCACTTTTACATCATCACCCTCGTATCGCACCACCCTCCACTCATCCCCAGCACAATCATGCGCACCAC GTCCATTTACCTGCTCTCGTGACCCAAGATGGAGCAAGTGTGGTTCCATTTGAGGTATTGACGAATTCACCTCGG ATCCTCAAGATGCGAGGCTGCACATGTGCGGTTTCCCGCGATCGTTCAAGATCTCGTCCCCGTCTCGCTAGCACT ATAAGTGTCACTTCGCCGACTTTGGATCTAAGCCGTGGTAGAAATGAGAGGGTTGGGCGGACCATAGATCGGGAG GAGGAGATGGAAGGGGACGAAGAACAAGACGAAAAACCATTAATCGGAAGAAGGCGACAAGTCATTGGATTATTG GTTCTGCAACTAGGAATTATGATCCATTCACTTGTCATAGGCCTAACTTTGGCGATAGCGGCCGGTAGTGATTTT ACGTCGCTCACGGTTGCTGTGGTGTTTCACCAACTATTCGAAGGCTTATCGCTTGGGATCCGTATTGCCGCACTT CCACCACCGCCTTCTACCGATGTTGAACTCTCCGCTCTTGGAATGAAGGCGCAGTCCAGTGTGAAGAAAGGGTTC TTCCAAGGTTTGCTTGGTGCCGGATGGACGTTGAAGGTCATTATGGCTATTCTATTTGGTATAACGGCGCCAGCT GGGATGGGTATAGGAATGATTGCGTTCAAAGTTGGAAAGGAGAAGGAAGGCATTGAACTTGCTCGAATGTATCTG ATCCAAGGACTGATGTCTGCTGTATCAGCCGGAATGCTGATATATGCATCCACCGTGGAGATGATTGCGGGAGAT TTCGTCTTTGGAGATGTTGAAGGACATAGCCATCATGATCATGGCCATTCGCATGATTTATCTGCACTGGGGAAT GATAAATCGAGAAGAAGTGATCGTTCTCGAGACGATGGTAGTGGTGGAGTTTCGGGGGATGAAGAGATGGGCGCA AATGACCTGACTGATGGAGATGATGGTGACGATGATAATCATCATCTACATGACCTACCGCATCGTCATGGGAAG CTTAGAAAGAAGTTGTTGGCGGTATTGAGTCTTCTGGCTGGTGTCGGAGGAATGGTTTTGATTGGATTGGGAGAG TAA |
| Gene | >Agabi119p4|026360 ATGCCTTTCCACCCACCTTTCATGTCCGAAGCTCACAATGGCCAGGCAGCGGAGCCTCGTATTCAGGTTATGGCC ATCGTCCTCGTCATCTCTCTCCTCGGTCGGTATCCATCATCCAGTACCCTCTGCGATTGTTAAACTCTCCCTATC GTAGCCGTATCCTTTCCTGGCATCTCCATGCTAGTCCCCCGTTTTCGCATACCTGGCATCTTTTTCTTCATTGGA AAACACTTTGGTACAGGTGGGTTTCGTTTCTACTGGTTTTCTTACGATATCCCGCGATTGATCTGCCCGCAAATT GCAAAAGGTGTTATCCTGGCCACTGCGTTTATCCATTTGCTTCAAGACTCTTTTGGAGCCCTTCAAAAAGGCCCG GTCAAAGAGCATTTTGGTAACATCGGAGACTATACAGGCCTCATCATGTACGTGCGGTATCCTGTCTGCACGCGG CCTATACGACCCTGACGATGTTTTATTTTAGTCTTGCATCTCTCCTCAGCATTTTCCTTATTGAATGTCAGTATC TCAAATCTTTTTGAACGAATATCGTTGAATCGTTATCTTAGATTTTTGCAATTCTTATGTTGAACATCTACACTC CGAACCGTCCCAACCGTCTTCACCCGAAAAATCTCGAGAATCTTCCATAGAGCGTTCACCGCATCCCGCTTTCTC GCCCTCGACAGCAGTAACATTACAGGTTCCTTCCTTGTCCACTTCGACATCGCAGCGAGGTAGATTAGAGACTAG TGAGAGTACCCCACTTTTACATCATCACCCTCGTATCGCACCACCCTCCACTCATCCCCAGCACAATCATGCGCA CCACGTCCATTTACCTGCTCTCGTGACCCAAGATGGAGCAAGTGTGGTTCCATTTGAGGTATTGACGAATTCACC TCGGATCCTCAAGATGCGAGGCTGCACATGTATGCATTCATGTGTCTGCGCTCCTTCTCAAGCTTCCTTGTTAAA AGGTGCGGTTTCCCGCGATCGTTCAAGATCTCGTCCCCGTCTCGCTAGCACTATAAGTGTCACTTCGCCGACTTT GGATCTAAGCCGTGGTAGAAATGAGAGGGTTGGGCGGACCATAGATCGGGAGGAGGAGATGGAAGGGGACGAAGA ACAAGACGAAAAACCATTAATCGGAAGAAGGCGACAAGTCATTGGATTATTGGTTCTGCAACTAGGAATTATGAT CCATTCACTTGTCATAGGCCTAACTTTGGCGATAGCGGCCGGTAGTGATTTTAGTGAGTCTATCATCACCATCAA GCTTCTGCCATCGTATTGCCCATCAAGCTATTTTCTAACTGATCTTATCTCAGCGTCGCTCACGGTTGCTGTGGT GTTTCACCAACTATTCGAAGGCTTATCGCTTGGGATCCGTATTGCCGCACTTCCACCACCGCCTTCTACCGATGT TGAACTCTCCGCTCTTGGAATGAAGGCGCAGTCCAGTGTGAAGAAAGGGTTCTTCCAAGGTTTGCTTGGTGCCGG ATGGACGTTGAAGGTCATTATGGCTATTCTATTTGGTATAACGGCGCCAGCTGGGATGGGTATAGGAATGATTGC GTTCAAAGTTGGAAAGGAGAAGGAAGGCATTGAACTTGGTGAGTTTTCAGCTATCCTGACGATTAGATATTTGAC ATGAATGCACTCTCAGCTCGAATGTATCTGATCCAAGGACTGATGTCTGCTGTATCAGCCGGAATGCTGATATAT GCATCCACCGTGGAGATGATTGCGGGAGATTTCGTCTTTGGAGATGTTGAAGGACATAGCCATCATGATCATGGC CATTCGCATGATTTATCTGCACTGGGGAATGATAAATCGAGAAGAAGTGATCGTTCTCGAGACGATGGTAGTGGT GGAGTTTCGGGGGATGAAGAGATGGGCGCAAATGACCTGACTGATGGAGATGATGGTGACGATGATAATCATCAT CTACATGACCTACCGCATCGTCATGGGAAGCTTAGAAAGAAGTTGTTGGCGGTATTGAGTCTTCTGGCTGGTGTC GGAGGAATGGTTTTGATTGGATTGGGAGAGTAA |