Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|026230
Gene name
Locationscaffold_11:1291440..1292785
Strand-
Gene length (bp)1345
Transcript length (bp)996
Coding sequence length (bp)996
Protein length (aa) 332

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08059 SEP SEP domain 7.1E-22 120 193
PF00789 UBX UBX domain 2.1E-13 254 329

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P0C8Q0|UBX1_EMENI UBX domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubx1 PE=3 SV=1 29 331 2.0E-51
sp|Q5RBG3|NSF1C_PONAB NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1 29 330 6.0E-43
sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2 29 330 6.0E-43
sp|Q3SZC4|NSF1C_BOVIN NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1 29 330 1.0E-42
sp|Q5ZK10|NSF1C_CHICK NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1 29 329 4.0E-42
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Swissprot ID Swissprot Description Start End E-value
sp|P0C8Q0|UBX1_EMENI UBX domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubx1 PE=3 SV=1 29 331 2.0E-51
sp|Q5RBG3|NSF1C_PONAB NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1 29 330 6.0E-43
sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2 29 330 6.0E-43
sp|Q3SZC4|NSF1C_BOVIN NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1 29 330 1.0E-42
sp|Q5ZK10|NSF1C_CHICK NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1 29 329 4.0E-42
sp|Q9CZ44|NSF1C_MOUSE NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1 16 330 2.0E-41
sp|O35987|NSF1C_RAT NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1 16 330 2.0E-41
sp|Q9UT81|UBX3_SCHPO UBX domain-containing protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubx3 PE=1 SV=1 19 331 9.0E-41
sp|Q5ZLK2|UBX2B_CHICK UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2 SV=1 57 329 1.0E-39
sp|P0C627|UBX2B_RAT UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1 52 330 2.0E-39
sp|P34223|UBX1_YEAST UBX domain-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHP1 PE=1 SV=1 17 330 4.0E-39
sp|Q14CS0|UBX2B_HUMAN UBX domain-containing protein 2B OS=Homo sapiens GN=UBXN2B PE=1 SV=1 54 330 5.0E-38
sp|Q0KL01|UBX2B_MOUSE UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2 59 330 1.0E-37
sp|Q0P3R5|UBX2B_XENLA UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2 SV=1 39 330 1.0E-37
sp|Q9SUG6|PUX3_ARATH Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana GN=PUX3 PE=1 SV=1 29 330 4.0E-37
sp|Q8RWU7|PUX4_ARATH Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1 29 330 9.0E-36
sp|Q7Y175|PUX5_ARATH Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana GN=PUX5 PE=1 SV=1 21 330 3.0E-31
sp|Q54BQ5|NSF1C_DICDI NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1 27 329 8.0E-28
sp|P68543|UBX2A_HUMAN UBX domain-containing protein 2A OS=Homo sapiens GN=UBXN2A PE=2 SV=1 111 329 4.0E-18
sp|Q99KJ0|UBX2A_MOUSE UBX domain-containing protein 2A OS=Mus musculus GN=Ubxn2a PE=1 SV=1 111 329 5.0E-18
sp|F4IXN6|PUX6_ARATH Plant UBX domain-containing protein 6 OS=Arabidopsis thaliana GN=PUX6 PE=3 SV=1 250 330 5.0E-13
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|026230
MPPRFGRIGDWSNDDDRDEQSDENNGKRESWFAGGERSGISVQNPNRQRGDAAPGGTDLVRELLRRAAERSPSDA
EEPSTSGGFSVFSGGGHTLGSDDVPSTYIADPNAPEEDEVVVRTITFWQDGFQIEDGDLMRYDDPEDAKILSELT
AGTAPISLLNVRQGQPVELRMIPRQGEMYTPPAGVRAFRGAGQRLGAPVPQIASGNSGQGAPSGSNSMPGTFPGV
TAPAAAASSSASTTERESLTTRFEVDQSRPTTSIQLRLADGTRMVCRMNLTHTIGDIRNFINAARPENVTRPYTI
GTTFPNRTLEDNSATIESAGLVNSVVVQRWM*
Coding >Agabi119p4|026230
ATGCCACCAAGATTTGGTCGTATTGGAGACTGGTCGAACGATGATGACCGCGATGAACAATCCGATGAGAATAAC
GGCAAGAGGGAGAGTTGGTTTGCAGGTGGAGAGAGAAGTGGAATATCTGTGCAGAACCCGAACCGCCAGAGAGGT
GATGCTGCTCCTGGTGGAACAGATCTTGTGAGGGAACTTCTTCGGCGCGCTGCAGAGCGTTCCCCGTCCGACGCA
GAAGAACCAAGCACGAGCGGTGGATTCAGTGTCTTTTCAGGAGGAGGACATACCCTTGGAAGTGATGATGTTCCA
TCCACTTATATTGCCGATCCAAATGCTCCGGAAGAAGATGAAGTCGTGGTTCGCACTATTACATTTTGGCAAGAT
GGATTTCAGATTGAAGATGGTGACCTTATGCGTTATGATGATCCTGAAGATGCCAAGATATTGTCGGAACTGACG
GCTGGCACGGCACCGATTTCACTCCTCAATGTCAGGCAAGGTCAACCTGTAGAACTGCGAATGATTCCGAGACAA
GGCGAAATGTATACACCTCCTGCTGGTGTTCGAGCTTTCAGAGGCGCTGGTCAACGACTTGGAGCACCAGTTCCA
CAAATTGCATCCGGGAATAGTGGACAGGGTGCTCCTTCTGGTTCTAATTCGATGCCGGGTACTTTCCCTGGAGTT
ACGGCTCCCGCCGCCGCCGCTTCTTCGTCAGCATCAACAACCGAGAGGGAGAGCTTAACTACGCGGTTTGAAGTG
GATCAGTCAAGACCTACAACGAGTATACAATTGAGACTCGCAGATGGGACCAGGATGGTCTGTCGAATGAATTTG
ACGCATACGATCGGCGATATTAGGAATTTTATCAATGCGGCTCGTCCGGAAAATGTGACCAGGCCTTATACTATC
GGAACCACGTTCCCAAATCGAACGTTGGAAGACAACTCAGCGACCATAGAAAGTGCAGGCCTCGTCAACAGTGTC
GTAGTCCAAAGATGGATGTAA
Transcript >Agabi119p4|026230
ATGCCACCAAGATTTGGTCGTATTGGAGACTGGTCGAACGATGATGACCGCGATGAACAATCCGATGAGAATAAC
GGCAAGAGGGAGAGTTGGTTTGCAGGTGGAGAGAGAAGTGGAATATCTGTGCAGAACCCGAACCGCCAGAGAGGT
GATGCTGCTCCTGGTGGAACAGATCTTGTGAGGGAACTTCTTCGGCGCGCTGCAGAGCGTTCCCCGTCCGACGCA
GAAGAACCAAGCACGAGCGGTGGATTCAGTGTCTTTTCAGGAGGAGGACATACCCTTGGAAGTGATGATGTTCCA
TCCACTTATATTGCCGATCCAAATGCTCCGGAAGAAGATGAAGTCGTGGTTCGCACTATTACATTTTGGCAAGAT
GGATTTCAGATTGAAGATGGTGACCTTATGCGTTATGATGATCCTGAAGATGCCAAGATATTGTCGGAACTGACG
GCTGGCACGGCACCGATTTCACTCCTCAATGTCAGGCAAGGTCAACCTGTAGAACTGCGAATGATTCCGAGACAA
GGCGAAATGTATACACCTCCTGCTGGTGTTCGAGCTTTCAGAGGCGCTGGTCAACGACTTGGAGCACCAGTTCCA
CAAATTGCATCCGGGAATAGTGGACAGGGTGCTCCTTCTGGTTCTAATTCGATGCCGGGTACTTTCCCTGGAGTT
ACGGCTCCCGCCGCCGCCGCTTCTTCGTCAGCATCAACAACCGAGAGGGAGAGCTTAACTACGCGGTTTGAAGTG
GATCAGTCAAGACCTACAACGAGTATACAATTGAGACTCGCAGATGGGACCAGGATGGTCTGTCGAATGAATTTG
ACGCATACGATCGGCGATATTAGGAATTTTATCAATGCGGCTCGTCCGGAAAATGTGACCAGGCCTTATACTATC
GGAACCACGTTCCCAAATCGAACGTTGGAAGACAACTCAGCGACCATAGAAAGTGCAGGCCTCGTCAACAGTGTC
GTAGTCCAAAGATGGATGTAA
Gene >Agabi119p4|026230
ATGCCACCAAGATTTGGTCGTATTGGAGACTGGTCGAACGATGATGACCGCGATGAACAATCCGATGAGAATAAC
GGCAAGAGGGAGAGTTGGTTTGCAGGTGGAGAGAGAAGGTAAGAAAAAAATCAGTCGCAGGATTCTCCGACATAC
TGACGACTTTCTCTTCAATAACAACGTTGTAGTGGAATATCTGTGCAGAACCCGAACCGCCAGAGAGGTGATGCT
GCTCCTGGTGGAACAGATCTTGTGAGGGAACTTCTTCGGCGCGCTGCAGAGTAAGTGTCGCGCTACTTCGGTGGG
GATCGTCTGATTTGTTGCTTGGTGCTTATGTAGGCGTTCCCCGTCCGACGCAGAAGAACCAAGCACGAGCGGTGG
ATTCAGTGTCTTTTCAGGAGGAGGACATACCCTTGGAAGTGATGATGTTCCATCCACTTATATTGCCGATCCAAA
TGCTCCGGAAGAAGGTAAAAACCATATCATCTTTGGAAACGTGTAAAGCAATTAACTCATGCATATGACAGATGA
AGTCGTGGTTCGCACTATTACATTTTGGCAAGATGGATTTCAGATTGAAGATGGTGACCTTATGCGTTATGATGA
TCCTGAAGATGCCAAGATATTGTCGGAACTGACGGCTGGGTAAGGAGCAAAACATGCTTATCGAATCTGTGTCAT
AACGGAAAGTTTAGCACGGCACCGATTTCACTCCTCAATGTCAGGCAAGGTCAACCTGTAGAACTGCGAATGATT
CCGAGACAAGGCGAAATGTATACACCTCCTGCTGGTGTTCGAGCTTTCAGAGGCGCTGGTCAACGACTTGGAGCA
CCAGTTCCACAAATTGCATCCGGGAATAGTGGACAGGGTGCTCCTTCTGGTTCTAATTCGATGCCGGGTACTTTC
CCTGGAGTTACGGCTCCCGCCGCCGCCGCTTCTTCGTCAGCATCAACAACCGAGAGGGAGAGCTTAACTACGCGG
TTTGAAGTGGATCAGTCAAGACCTACAACGAGTATACAATTGAGACTCGCAGATGGGACCAGGTATGCTCTTTCT
TACTATCTCGTATTATGATGTTCGATGCTAATTCTACTGAAAACAGGATGGTCTGTCGAATGAATTTGACGCATA
CGATCGGCGATATTAGGAATTTTATCAATGCGTAAGCTATCAGGACCATCTCTTGATCGGAAGCTCTGCTCATCA
CCAACGATTAAGGGCTCGTCCGGAAAATGTGACCAGGCCTTATACTATCGGAACCACGTTCCCAAATCGAACGTT
GGAAGACAACTCAGCGACCATAGAAAGTGCAGGCCTCGTCAACAGTGTCGTAGTCCAAAGATGGATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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