© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|024080 |
| Gene name | |
| Location | scaffold_11:721640..722643 |
| Strand | + |
| Gene length (bp) | 1003 |
| Transcript length (bp) | 465 |
| Coding sequence length (bp) | 465 |
| Protein length (aa) | 155 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 5.1E-21 | 72 | 142 |
| PF00240 | ubiquitin | Ubiquitin family | 1.9E-11 | 72 | 144 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FLP6|SUMO2_ARATH | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1 | 61 | 147 | 2.0E-21 |
| sp|P55852|SUMO1_ARATH | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2 | 61 | 145 | 6.0E-21 |
| sp|P55857|SUMO1_ORYSJ | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1 | 56 | 147 | 1.0E-20 |
| sp|O13351|PMT3_SCHPO | Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt3 PE=1 SV=2 | 72 | 147 | 1.0E-20 |
| sp|P55853|SUMO_CAEEL | Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1 | 72 | 147 | 5.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FLP6|SUMO2_ARATH | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1 | 61 | 147 | 2.0E-21 |
| sp|P55852|SUMO1_ARATH | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2 | 61 | 145 | 6.0E-21 |
| sp|P55857|SUMO1_ORYSJ | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1 | 56 | 147 | 1.0E-20 |
| sp|O13351|PMT3_SCHPO | Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt3 PE=1 SV=2 | 72 | 147 | 1.0E-20 |
| sp|P55853|SUMO_CAEEL | Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1 | 72 | 147 | 5.0E-20 |
| sp|Q12306|SMT3_YEAST | Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMT3 PE=1 SV=1 | 48 | 147 | 1.0E-19 |
| sp|Q6DI05|SUMO3_DANRE | Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1 | 61 | 150 | 1.0E-18 |
| sp|Q6NV25|SMO3L_DANRE | Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=3 SV=1 | 61 | 150 | 1.0E-18 |
| sp|Q17QV3|SUMO3_BOVIN | Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1 | 61 | 153 | 2.0E-18 |
| sp|Q7SZR5|SUMO1_DANRE | Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1 | 48 | 147 | 3.0E-18 |
| sp|Q6DK72|SUMO3_XENTR | Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1 | 61 | 147 | 4.0E-18 |
| sp|Q9Z172|SUMO3_MOUSE | Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=1 SV=1 | 61 | 147 | 4.0E-18 |
| sp|Q5XIF4|SUMO3_RAT | Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=3 SV=1 | 61 | 147 | 4.0E-18 |
| sp|Q6DHL4|SUMO2_DANRE | Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=3 SV=1 | 61 | 148 | 4.0E-18 |
| sp|Q7SZ22|SUMO3_XENLA | Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1 | 61 | 147 | 4.0E-18 |
| sp|Q5ZHQ1|SUMO3_CHICK | Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|Q7ZTK7|SMO2A_XENLA | Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-a PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|P61955|SUMO2_BOVIN | Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|Q5ZJM9|SUMO2_CHICK | Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|Q6LDZ8|SUMO2_CRIGR | Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|Q2PFW2|SUMO2_MACFA | Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|P61957|SUMO2_MOUSE | Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=1 SV=1 | 61 | 147 | 5.0E-18 |
| sp|P61958|SUMO2_PIG | Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1 | 61 | 147 | 5.0E-18 |
| sp|P61959|SUMO2_RAT | Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1 | 61 | 147 | 5.0E-18 |
| sp|P55854|SUMO3_HUMAN | Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2 | 61 | 147 | 5.0E-18 |
| sp|P61956|SUMO2_HUMAN | Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=3 | 61 | 147 | 5.0E-18 |
| sp|Q8QGH2|SUMO1_CHICK | Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1 | 48 | 149 | 7.0E-18 |
| sp|Q28H04|SUMO2_XENTR | Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1 | 61 | 147 | 1.0E-17 |
| sp|P63165|SUMO1_HUMAN | Small ubiquitin-related modifier 1 OS=Homo sapiens GN=SUMO1 PE=1 SV=1 | 48 | 149 | 2.0E-17 |
| sp|Q5E9D1|SUMO1_BOVIN | Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1 | 48 | 149 | 2.0E-17 |
| sp|P63166|SUMO1_MOUSE | Small ubiquitin-related modifier 1 OS=Mus musculus GN=Sumo1 PE=1 SV=1 | 48 | 149 | 2.0E-17 |
| sp|A7WLH8|SUMO1_PIG | Small ubiquitin-related modifier 1 OS=Sus scrofa GN=SUMO1 PE=3 SV=1 | 48 | 149 | 2.0E-17 |
| sp|Q5I0H3|SUMO1_RAT | Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1 | 48 | 149 | 2.0E-17 |
| sp|Q9MZD5|SUMO1_CERNI | Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1 | 48 | 149 | 2.0E-17 |
| sp|Q6GPW2|SMO2B_XENLA | Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-b PE=3 SV=1 | 61 | 147 | 2.0E-17 |
| sp|Q5R6J4|SUMO1_PONAB | Small ubiquitin-related modifier 1 OS=Pongo abelii GN=SUMO1 PE=3 SV=1 | 48 | 149 | 2.0E-17 |
| sp|Q2EF74|SUMO1_ICTTR | Small ubiquitin-related modifier 1 OS=Ictidomys tridecemlineatus GN=SUMO1 PE=3 SV=1 | 48 | 149 | 3.0E-17 |
| sp|Q9PT08|SUMO1_ONCMY | Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1 | 48 | 147 | 3.0E-17 |
| sp|B3H5R8|SUMO8_ARATH | Putative small ubiquitin-related modifier 8 OS=Arabidopsis thaliana GN=SUMO8 PE=1 SV=1 | 62 | 149 | 1.0E-16 |
| sp|O57686|SMO1A_XENLA | Small ubiquitin-related modifier 1-A OS=Xenopus laevis GN=sumo1-a PE=1 SV=1 | 48 | 150 | 3.0E-16 |
| sp|Q3E8A8|SUMO7_ARATH | Putative small ubiquitin-related modifier 7 OS=Arabidopsis thaliana GN=SUMO7 PE=1 SV=2 | 58 | 152 | 4.0E-16 |
| sp|Q6DEP7|SUMO1_XENTR | Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1 | 48 | 149 | 5.0E-16 |
| sp|Q5EAX4|SMO1B_XENLA | Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-b PE=3 SV=1 | 48 | 149 | 5.0E-16 |
| sp|A7WLI0|SUMO4_PIG | Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1 | 61 | 147 | 6.0E-16 |
| sp|Q6EEV6|SUMO4_HUMAN | Small ubiquitin-related modifier 4 OS=Homo sapiens GN=SUMO4 PE=1 SV=2 | 61 | 147 | 2.0E-14 |
| sp|Q8VZI7|SUMO5_ARATH | Small ubiquitin-related modifier 5 OS=Arabidopsis thaliana GN=SUMO5 PE=1 SV=1 | 68 | 147 | 4.0E-12 |
| sp|Q9FLP5|SUMO3_ARATH | Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana GN=SUMO3 PE=1 SV=1 | 66 | 147 | 5.0E-11 |
| sp|Q9FKC5|SUMO4_ARATH | Putative small ubiquitin-related modifier 4 OS=Arabidopsis thaliana GN=SUMO4 PE=1 SV=1 | 56 | 147 | 8.0E-10 |
| sp|Q9FKC6|SUMO6_ARATH | Putative small ubiquitin-related modifier 6 OS=Arabidopsis thaliana GN=SUMO6 PE=1 SV=1 | 61 | 147 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|024080 MSLIFVRSVIQGRSNSAETGFLSNLSDAAREKNRPSLCTTTFSSLFEMSDNEQFPSQVGGEDVKSEDPNAPITIK VVSSAGEEVFFKIKRSTKLSKLQGAYANKVGKDVSSIRFLYDGNRLNDDDTPALLDMDDGDAIDVMVEQVGGRSC QYCS* |
| Coding | >Agabi119p4|024080 ATGTCGCTTATATTCGTTCGATCTGTTATCCAAGGGCGTTCAAACAGCGCAGAAACTGGTTTCCTTTCCAATCTG TCCGACGCTGCCCGTGAAAAGAACCGCCCTTCGCTTTGTACCACCACCTTCTCATCTCTGTTCGAGATGTCTGAC AACGAACAATTTCCTTCCCAAGTTGGCGGCGAGGATGTGAAGTCTGAGGACCCCAACGCCCCAATTACTATTAAG GTTGTGAGCTCGGCTGGAGAAGAGGTTTTTTTCAAGATCAAAAGAAGCACGAAGCTCAGCAAGCTGCAAGGCGCC TATGCCAATAAAGTGGGTAAAGATGTGAGCAGCATCAGGTTCCTGTACGATGGTAATCGGCTAAACGATGACGAT ACGCCGGCGCTTCTGGACATGGATGATGGCGACGCTATTGATGTTATGGTTGAACAGGTCGGAGGCCGGTCATGT CAATATTGTTCCTAG |
| Transcript | >Agabi119p4|024080 ATGTCGCTTATATTCGTTCGATCTGTTATCCAAGGGCGTTCAAACAGCGCAGAAACTGGTTTCCTTTCCAATCTG TCCGACGCTGCCCGTGAAAAGAACCGCCCTTCGCTTTGTACCACCACCTTCTCATCTCTGTTCGAGATGTCTGAC AACGAACAATTTCCTTCCCAAGTTGGCGGCGAGGATGTGAAGTCTGAGGACCCCAACGCCCCAATTACTATTAAG GTTGTGAGCTCGGCTGGAGAAGAGGTTTTTTTCAAGATCAAAAGAAGCACGAAGCTCAGCAAGCTGCAAGGCGCC TATGCCAATAAAGTGGGTAAAGATGTGAGCAGCATCAGGTTCCTGTACGATGGTAATCGGCTAAACGATGACGAT ACGCCGGCGCTTCTGGACATGGATGATGGCGACGCTATTGATGTTATGGTTGAACAGGTCGGAGGCCGGTCATGT CAATATTGTTCCTAG |
| Gene | >Agabi119p4|024080 ATGTCGCTTATATTCGTTCGATCTGTTATCCAAGGGCGTTCAAACAGCGCAGAAACTGGTTTCCTTTCCAATCTG TCCGACGCTGCCCGTGTGATGAAGCAGCTGACTAAGCGACATTAATGAATCTGATGTAAATACCCACCCCAAGTG AAAACGAAAGGAAAAGAACCGCCCTTCGCTTTGTACCACCACCTTCTCATCTCTGGTACATCTTCCTCCCCTGAC GATCCTCATATCTCCAAATTTACCTGCATTCGTCTATCCCATATCGTCGATTTTTCACGTTTAGTTCGAGATGTC TGACAACGAACAATTTCCTTCCCAAGTTGGCGGCGAGGATGTGAAGTCTGAGGACCCCAACGCCCCAATTACTAT TAAGGTATGAACTAATGTTACTCGCTCTACGACAATCTGAGCTTATACACCCTTTATCTTTTGCTCTGCTCGGCC TTTTTGATCGCTCTTGTGCCCGGAAACATCGGCCGATACATTGCGTCTTCCGCGCGTTTTGCTCTTCAAATCGTG ATTAACGATATCCCCCGGTCTGGTCACATATTCTCTGCACGCGTCTCTTCGCGCGTACAGGTTGTGAGCTCGGCT GGAGAAGAGGTTTTTTTCAAGATCAAAAGAAGCACGAAGCTCAGCAAGCTGCAAGGCGCCTATGCCAATAAAGTG GGTAAAGATGTGAGCAGCATCAGGTTCGTTGTATATGATTATCTTGAGGGCGAACCTGTGGAGTGCTCACTCAAA TAGGTTCCTGTACGATGGTAATCGGCTAAACGATGACGATACGCCGGCGCTTCTGGACATGGATGATGGCGGTAC GTTTGTGATCTTTCCCCCTCCCTGAGCATGTAACCCGTACTGATACTCCTCGCTACTAACAGACGCTATTGATGT TATGGTTGAACGTACGTTGCAATTGCTTTGTCGTGATGTCTAGTGGCTGACATTCTGCTGTTTGATAGAGGTCGG AGGCCGGTCATGTCAATATTGTTCCTAG |