Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|021240
Gene name
Location	scaffold_10:1801409..1802907
Strand	-
Gene length (bp)	1498
Transcript length (bp)	1395
Coding sequence length (bp)	1395
Protein length (aa)	465

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00400	WD40	WD domain, G-beta repeat	1.1E-02	217	254

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9BRP4\|PAAF1_HUMAN	Proteasomal ATPase-associated factor 1 OS=Homo sapiens GN=PAAF1 PE=1 SV=2	5	464	9.0E-22
sp\|Q148I1\|PAAF1_BOVIN	Proteasomal ATPase-associated factor 1 OS=Bos taurus GN=PAAF1 PE=2 SV=1	5	464	3.0E-20
sp\|Q5ZK69\|PAAF1_CHICK	Proteasomal ATPase-associated factor 1 OS=Gallus gallus GN=PAAF1 PE=2 SV=1	10	464	5.0E-19
sp\|Q8MYE8\|PAAF1_DICDI	Probable proteasomal ATPase-associated factor 1 OS=Dictyostelium discoideum GN=paaf1 PE=3 SV=1	31	462	4.0E-17
sp\|P53196\|RPN14_YEAST	26S proteasome regulatory subunit RPN14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN14 PE=1 SV=1	94	425	7.0E-15

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9BRP4\|PAAF1_HUMAN	Proteasomal ATPase-associated factor 1 OS=Homo sapiens GN=PAAF1 PE=1 SV=2	5	464	9.0E-22
sp\|Q148I1\|PAAF1_BOVIN	Proteasomal ATPase-associated factor 1 OS=Bos taurus GN=PAAF1 PE=2 SV=1	5	464	3.0E-20
sp\|Q5ZK69\|PAAF1_CHICK	Proteasomal ATPase-associated factor 1 OS=Gallus gallus GN=PAAF1 PE=2 SV=1	10	464	5.0E-19
sp\|Q8MYE8\|PAAF1_DICDI	Probable proteasomal ATPase-associated factor 1 OS=Dictyostelium discoideum GN=paaf1 PE=3 SV=1	31	462	4.0E-17
sp\|P53196\|RPN14_YEAST	26S proteasome regulatory subunit RPN14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN14 PE=1 SV=1	94	425	7.0E-15
sp\|Q7KWK5\|PRP19_DICDI	Pre-mRNA-processing factor 19 OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1	224	402	3.0E-09
sp\|P41318\|LST8_YEAST	Target of rapamycin complex subunit LST8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1 SV=1	217	462	3.0E-06

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GO

GO Term	Description	Terminal node
GO:0005515	protein binding	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|021240 MTSPMALPILTVQSDFADVIADVDAGLVPEDRFWLSCYKSGEPSVHAKVHVALDDVDRNLIRFTPKDGDVDFVKT QSTYTAACHSLDIPPTPILLPTQEYTDTDTRRPRRITAFDISLDKSRFAIGHLDGSLSIHPISPPSSTPKRPQRV NTSNKRKLVSKPHVSNITHLQFFPSSRVLLSSGADFSLSILSTEFPDAWQTSSSETSSLSVSGSRIQPVRVLRGH TRSVTSATIIDRGRNIISSSLDSSLNLWDIPSGSVIHTLNSTSPVLCTTIGTNEVLLPPDGEEEEKEVGIKRDEM EDEHVQQTVSYAGLQNGSIQVFDWRTRLNFSLSKPPSSAPINSISYLPQQSLLATGSSKGIITLYDVRSLSSSSL PLTSFRRNEAGISDLAFQYRQQRVGLAIATADGLPYIASIIPEGPGIQTELVGVDCDPVGNIRVVRGDSDDQEEV WTASDDGIVRRYIL*
Coding	>Agabi119p4\|021240 ATGACGTCGCCCATGGCCCTCCCCATCCTCACCGTCCAATCCGACTTTGCCGATGTCATCGCCGATGTAGATGCC GGCCTCGTCCCCGAAGACCGCTTCTGGCTCTCCTGCTACAAATCCGGCGAGCCTTCTGTCCACGCCAAAGTTCAT GTCGCGTTGGACGATGTCGATCGAAATCTAATCAGATTCACTCCGAAAGACGGCGATGTCGACTTTGTCAAGACT CAAAGCACATATACTGCTGCTTGTCACTCGCTGGACATCCCACCAACACCGATTCTGCTCCCTACGCAAGAATAC ACCGATACAGATACTCGCAGACCTCGACGAATAACAGCGTTTGATATCTCACTTGACAAATCTCGGTTCGCCATA GGTCATCTCGATGGCTCCCTCTCCATTCACCCCATATCACCTCCCTCATCAACGCCCAAACGCCCGCAAAGAGTC AATACTTCCAACAAACGTAAACTCGTATCAAAACCACACGTATCCAATATCACCCATCTCCAATTCTTTCCGTCT TCTAGGGTATTGCTCTCTTCGGGCGCAGACTTCAGTTTGTCTATCCTTTCCACAGAATTCCCCGATGCTTGGCAA ACTTCTTCTTCTGAAACCTCATCATTATCCGTTTCGGGTTCGAGGATACAACCTGTACGCGTACTTCGTGGGCAC ACCCGTTCAGTTACTTCAGCAACTATCATTGATCGAGGTAGAAATATCATCTCCTCTTCTTTGGATTCGAGTTTG AATTTATGGGATATTCCTTCTGGAAGTGTTATCCACACTCTAAATTCCACTTCACCTGTTTTGTGCACTACCATT GGAACAAACGAGGTTCTCTTACCTCCCGATGGCGAAGAAGAAGAAAAAGAAGTCGGTATAAAAAGAGATGAAATG GAAGATGAACACGTTCAACAAACAGTCTCTTATGCCGGTTTACAAAATGGTTCTATCCAAGTTTTCGATTGGCGC ACGAGGTTAAATTTCAGTCTCTCCAAACCTCCTTCATCTGCGCCTATCAATTCTATATCCTATCTCCCCCAACAA TCTTTATTAGCGACGGGTTCATCCAAGGGCATAATCACGCTATACGACGTTCGCTCTCTCTCTTCCTCTTCTCTT CCATTAACTTCTTTTCGACGTAACGAGGCCGGTATATCCGATTTGGCTTTTCAATATCGTCAACAACGAGTGGGG TTGGCGATAGCGACAGCAGATGGATTACCCTATATTGCTAGTATCATACCTGAAGGACCTGGTATCCAAACGGAA TTGGTGGGTGTCGATTGTGATCCTGTTGGGAATATTCGGGTTGTAAGGGGTGATAGTGATGATCAAGAAGAAGTC TGGACTGCTAGTGATGACGGTATTGTCAGGAGATATATTTTGTGA
Transcript	>Agabi119p4\|021240 ATGACGTCGCCCATGGCCCTCCCCATCCTCACCGTCCAATCCGACTTTGCCGATGTCATCGCCGATGTAGATGCC GGCCTCGTCCCCGAAGACCGCTTCTGGCTCTCCTGCTACAAATCCGGCGAGCCTTCTGTCCACGCCAAAGTTCAT GTCGCGTTGGACGATGTCGATCGAAATCTAATCAGATTCACTCCGAAAGACGGCGATGTCGACTTTGTCAAGACT CAAAGCACATATACTGCTGCTTGTCACTCGCTGGACATCCCACCAACACCGATTCTGCTCCCTACGCAAGAATAC ACCGATACAGATACTCGCAGACCTCGACGAATAACAGCGTTTGATATCTCACTTGACAAATCTCGGTTCGCCATA GGTCATCTCGATGGCTCCCTCTCCATTCACCCCATATCACCTCCCTCATCAACGCCCAAACGCCCGCAAAGAGTC AATACTTCCAACAAACGTAAACTCGTATCAAAACCACACGTATCCAATATCACCCATCTCCAATTCTTTCCGTCT TCTAGGGTATTGCTCTCTTCGGGCGCAGACTTCAGTTTGTCTATCCTTTCCACAGAATTCCCCGATGCTTGGCAA ACTTCTTCTTCTGAAACCTCATCATTATCCGTTTCGGGTTCGAGGATACAACCTGTACGCGTACTTCGTGGGCAC ACCCGTTCAGTTACTTCAGCAACTATCATTGATCGAGGTAGAAATATCATCTCCTCTTCTTTGGATTCGAGTTTG AATTTATGGGATATTCCTTCTGGAAGTGTTATCCACACTCTAAATTCCACTTCACCTGTTTTGTGCACTACCATT GGAACAAACGAGGTTCTCTTACCTCCCGATGGCGAAGAAGAAGAAAAAGAAGTCGGTATAAAAAGAGATGAAATG GAAGATGAACACGTTCAACAAACAGTCTCTTATGCCGGTTTACAAAATGGTTCTATCCAAGTTTTCGATTGGCGC ACGAGGTTAAATTTCAGTCTCTCCAAACCTCCTTCATCTGCGCCTATCAATTCTATATCCTATCTCCCCCAACAA TCTTTATTAGCGACGGGTTCATCCAAGGGCATAATCACGCTATACGACGTTCGCTCTCTCTCTTCCTCTTCTCTT CCATTAACTTCTTTTCGACGTAACGAGGCCGGTATATCCGATTTGGCTTTTCAATATCGTCAACAACGAGTGGGG TTGGCGATAGCGACAGCAGATGGATTACCCTATATTGCTAGTATCATACCTGAAGGACCTGGTATCCAAACGGAA TTGGTGGGTGTCGATTGTGATCCTGTTGGGAATATTCGGGTTGTAAGGGGTGATAGTGATGATCAAGAAGAAGTC TGGACTGCTAGTGATGACGGTATTGTCAGGAGATATATTTTGTGA
Gene	>Agabi119p4\|021240 ATGACGTCGCCCATGGCCCTCCCCATCCTCACCGTCCAATCCGACTTTGCCGATGTCATCGCCGATGTAGATGCC GGCCTCGTCCCCGAAGACCGCTTCTGGCTCTCCTGCTACAAATCCGGCGAGCCTTCTGTCCACGCCAAAGTTCAT GTCGCGTTGGACGATGTCGATCGAAATCTAATCAGATTCACTCCGAAAGACGGCGATGTCGACTTTGTCAAGACT CAAAGCGTAAGTCTTTCAGCGAGACATAGTGCGAGTGCTCATACCCGACAAAGACATATACTGCTGCTTGTCACT CGCTGGACATCCCACCAACACCGATTCTGCTCCCTACGCAAGAATACACCGATACAGATACTCGCAGAGTGAAAA TTCTCAATTACATGCAAATTCAAATAGTAAATACTGACTTTCTTTCTAGCCTCGACGAATAACAGCGTTTGATAT CTCACTTGACAAATCTCGGTTCGCCATAGGTCATCTCGATGGCTCCCTCTCCATTCACCCCATATCACCTCCCTC ATCAACGCCCAAACGCCCGCAAAGAGTCAATACTTCCAACAAACGTAAACTCGTATCAAAACCACACGTATCCAA TATCACCCATCTCCAATTCTTTCCGTCTTCTAGGGTATTGCTCTCTTCGGGCGCAGACTTCAGTTTGTCTATCCT TTCCACAGAATTCCCCGATGCTTGGCAAACTTCTTCTTCTGAAACCTCATCATTATCCGTTTCGGGTTCGAGGAT ACAACCTGTACGCGTACTTCGTGGGCACACCCGTTCAGTTACTTCAGCAACTATCATTGATCGAGGTAGAAATAT CATCTCCTCTTCTTTGGATTCGAGTTTGAATTTATGGGATATTCCTTCTGGAAGTGTTATCCACACTCTAAATTC CACTTCACCTGTTTTGTGCACTACCATTGGAACAAACGAGGTTCTCTTACCTCCCGATGGCGAAGAAGAAGAAAA AGAAGTCGGTATAAAAAGAGATGAAATGGAAGATGAACACGTTCAACAAACAGTCTCTTATGCCGGTTTACAAAA TGGTTCTATCCAAGTTTTCGATTGGCGCACGAGGTTAAATTTCAGTCTCTCCAAACCTCCTTCATCTGCGCCTAT CAATTCTATATCCTATCTCCCCCAACAATCTTTATTAGCGACGGGTTCATCCAAGGGCATAATCACGCTATACGA CGTTCGCTCTCTCTCTTCCTCTTCTCTTCCATTAACTTCTTTTCGACGTAACGAGGCCGGTATATCCGATTTGGC TTTTCAATATCGTCAACAACGAGTGGGGTTGGCGATAGCGACAGCAGATGGATTACCCTATATTGCTAGTATCAT ACCTGAAGGACCTGGTATCCAAACGGAATTGGTGGGTGTCGATTGTGATCCTGTTGGGAATATTCGGGTTGTAAG GGGTGATAGTGATGATCAAGAAGAAGTCTGGACTGCTAGTGATGACGGTATTGTCAGGAGATATATTTTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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