© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|020200 |
| Gene name | |
| Location | scaffold_10:1458813..1462040 |
| Strand | - |
| Gene length (bp) | 3227 |
| Transcript length (bp) | 2400 |
| Coding sequence length (bp) | 2400 |
| Protein length (aa) | 800 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01120 | Alpha_L_fucos | Alpha-L-fucosidase | 3.6E-81 | 343 | 689 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P10901|FUCO_DICDI | Alpha-L-fucosidase OS=Dictyostelium discoideum GN=alfA PE=3 SV=1 | 348 | 738 | 2.0E-54 |
| sp|Q9BTY2|FUCO2_HUMAN | Plasma alpha-L-fucosidase OS=Homo sapiens GN=FUCA2 PE=1 SV=2 | 348 | 765 | 4.0E-50 |
| sp|Q99KR8|FUCO2_MOUSE | Plasma alpha-L-fucosidase OS=Mus musculus GN=Fuca2 PE=1 SV=1 | 348 | 795 | 2.0E-49 |
| sp|Q5RFI5|FUCO2_PONAB | Plasma alpha-L-fucosidase OS=Pongo abelii GN=FUCA2 PE=2 SV=1 | 348 | 795 | 1.0E-48 |
| sp|Q6AYS4|FUCO2_RAT | Plasma alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca2 PE=2 SV=1 | 348 | 794 | 2.0E-48 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P10901|FUCO_DICDI | Alpha-L-fucosidase OS=Dictyostelium discoideum GN=alfA PE=3 SV=1 | 348 | 738 | 2.0E-54 |
| sp|Q9BTY2|FUCO2_HUMAN | Plasma alpha-L-fucosidase OS=Homo sapiens GN=FUCA2 PE=1 SV=2 | 348 | 765 | 4.0E-50 |
| sp|Q99KR8|FUCO2_MOUSE | Plasma alpha-L-fucosidase OS=Mus musculus GN=Fuca2 PE=1 SV=1 | 348 | 795 | 2.0E-49 |
| sp|Q5RFI5|FUCO2_PONAB | Plasma alpha-L-fucosidase OS=Pongo abelii GN=FUCA2 PE=2 SV=1 | 348 | 795 | 1.0E-48 |
| sp|Q6AYS4|FUCO2_RAT | Plasma alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca2 PE=2 SV=1 | 348 | 794 | 2.0E-48 |
| sp|C3YWU0|FUCO_BRAFL | Alpha-L-fucosidase OS=Branchiostoma floridae GN=BRAFLDRAFT_56888 PE=3 SV=2 | 348 | 738 | 6.0E-44 |
| sp|P17164|FUCO_RAT | Tissue alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca1 PE=1 SV=1 | 344 | 739 | 2.0E-42 |
| sp|Q2KIM0|FUCO_BOVIN | Tissue alpha-L-fucosidase OS=Bos taurus GN=FUCA1 PE=2 SV=1 | 344 | 772 | 2.0E-42 |
| sp|Q60HF8|FUCO_MACFA | Tissue alpha-L-fucosidase OS=Macaca fascicularis GN=FUCA1 PE=2 SV=1 | 340 | 798 | 5.0E-42 |
| sp|P49713|FUCO_CAEEL | Putative alpha-L-fucosidase OS=Caenorhabditis elegans GN=W03G11.3 PE=3 SV=2 | 342 | 707 | 7.0E-42 |
| sp|Q9VTJ4|FUCO_DROME | Putative alpha-L-fucosidase OS=Drosophila melanogaster GN=Fuca PE=2 SV=2 | 350 | 697 | 2.0E-41 |
| sp|P04066|FUCO_HUMAN | Tissue alpha-L-fucosidase OS=Homo sapiens GN=FUCA1 PE=1 SV=4 | 341 | 798 | 4.0E-41 |
| sp|Q99LJ1|FUCO_MOUSE | Tissue alpha-L-fucosidase OS=Mus musculus GN=Fuca1 PE=1 SV=1 | 344 | 734 | 7.0E-40 |
| sp|P48300|FUCO_CANLF | Tissue alpha-L-fucosidase OS=Canis lupus familiaris GN=FUCA1 PE=2 SV=1 | 341 | 739 | 1.0E-38 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004560 | alpha-L-fucosidase activity | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0015928 | fucosidase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0003674 | molecular_function | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|020200 MGVSSKGLVLGLFLPSFVNIIFGAIALGQITTVPLPLNIIFDNQASSPDGSANFDGHGASFDSRFLPSGPWIHDN VQYELPETWGTGTDNVITDGQILGIEDSYVHELHFLYAGDINGGEFVRNFVLNFADNSTFTVQLYAKNWWRWPNL NKGAIQTPYHFEPNGVKNFNASQIYQWSTAVPSESKLRSITFPPSNPARRLHLFAMSYTPSTDPPASSSTNSSDA KISVRRARFTTKWELIHNQRAQIVEITLANLFPTFTLSKSTSITSNHSISVTGNGIETVRPGSLVRLVPGDQARV DVVVTGTSASNAGKNATVEIRDNQGNIVGSFGGWQISPLVEEWTADADVLEKHEVPTWWKKAKYGIFIHWGVYSH PAFAPNGTYAEWYDWNLHNPPDASSPVWDHHLQTFGPTIVYDDFIPNFTASKFNASAWLDLFDKAGAKYFVFVTK HHDGYALFDTQNTTHRSSVHLGPKRDFLQDLMETAKREKPNMHRGTYYSLPEWFNPDYAKYGFGSWPGGLAHNAF NNSLLEPYTGHLDIDDYIDDLQVPQMLDIALKYDTEIMWCDIGGPNKTLDVSAQFYNHAQNQGRQVTINNLPDFD TPEYATFGAIQTRDWESNEGMDPFSYGLNKATDPSQYKNATSIIQTLVDIVSKNGNFLLDVGPNAEGEIIAPMAN NLLDAGNWLEYSGECVYDTDFWFQSSQDQVENDLNLAPARFTTTPTSLCVITFNEPSSGKLVIQKRLPILPGDQV FLQHPNATIRGTELEWSVGETGKLTISVTEDQTKDVKNAWAFKIVYAKT* |
| Coding | >Agabi119p4|020200 ATGGGAGTTTCATCCAAGGGCTTGGTATTAGGCCTCTTCCTACCGTCCTTCGTCAATATCATCTTCGGCGCGATA GCTCTTGGCCAAATCACGACTGTTCCTTTACCGCTGAACATCATTTTTGATAACCAAGCTTCATCCCCGGATGGT TCTGCCAACTTTGATGGACACGGCGCGAGTTTTGATAGTCGGTTTCTTCCTTCTGGCCCGTGGATCCATGATAAT GTCCAGTATGAACTCCCTGAGACGTGGGGAACTGGCACCGATAATGTGATCACTGACGGCCAGATTTTGGGCATC GAGGACAGCTACGTACACGAACTGCACTTTCTATATGCTGGCGATATCAATGGTGGAGAATTTGTGAGGAATTTT GTCTTGAATTTTGCGGACAATTCGACCTTCACTGTACAATTATATGCGAAGAACTGGTGGAGATGGCCAAACTTG AATAAAGGAGCAATTCAGACACCGTATCATTTTGAACCTAACGGGGTCAAGAACTTCAACGCGTCTCAAATATAC CAATGGTCGACTGCAGTTCCTTCAGAATCGAAGCTTCGATCTATAACTTTTCCACCCAGCAACCCTGCACGAAGG CTTCATCTTTTCGCAATGAGTTATACACCTTCCACAGATCCACCTGCGTCGTCGTCAACAAATTCTAGCGACGCT AAAATCTCAGTCCGTCGAGCTCGGTTTACAACTAAATGGGAACTCATTCACAATCAAAGGGCTCAAATCGTCGAG ATAACACTCGCAAATCTCTTTCCAACATTTACACTTTCCAAATCAACATCAATCACATCGAATCACAGTATTAGT GTTACAGGAAATGGGATTGAGACTGTCCGTCCTGGATCGCTTGTTCGATTAGTCCCTGGTGATCAAGCTCGCGTT GATGTTGTAGTGACTGGGACGAGCGCTTCGAATGCTGGAAAGAATGCAACTGTGGAAATTAGAGATAATCAAGGT AATATTGTAGGTTCGTTTGGAGGGTGGCAGATCTCGCCGTTGGTTGAAGAATGGACTGCCGATGCTGATGTTCTT GAGAAGCATGAGGTGCCCACATGGTGGAAGAAGGCAAAGTATGGGATATTCATTCATTGGGGCGTCTATAGTCAC CCAGCATTTGCGCCCAATGGCACTTATGCCGAGTGGTATGACTGGAATCTTCATAATCCCCCTGATGCGAGTAGC CCAGTATGGGACCATCATCTCCAAACTTTCGGCCCGACCATCGTATATGATGATTTCATCCCGAACTTTACGGCA AGCAAATTTAATGCCAGCGCGTGGCTTGACTTGTTCGATAAAGCAGGGGCTAAATATTTTGTCTTTGTCACTAAA CATCATGATGGTTATGCGCTTTTCGATACGCAGAACACGACGCACAGAAGTAGCGTCCACCTCGGCCCTAAACGC GATTTCCTACAAGATTTGATGGAAACAGCTAAACGTGAGAAACCCAACATGCATAGAGGAACGTACTATTCTTTA CCAGAATGGTTCAATCCTGATTATGCGAAATACGGATTCGGTTCTTGGCCAGGTGGATTAGCTCATAACGCCTTC AATAATAGTCTATTGGAGCCATACACCGGGCATCTCGATATCGATGACTATATCGATGATCTCCAAGTCCCTCAA ATGCTAGATATTGCTCTGAAATACGACACGGAAATTATGTGGTGTGACATTGGAGGCCCAAATAAAACTTTAGAC GTCTCGGCCCAGTTTTACAATCACGCTCAAAACCAAGGTCGTCAAGTCACCATCAACAACCTTCCGGATTTTGAC ACACCCGAATATGCAACTTTTGGCGCCATTCAGACTCGAGATTGGGAATCGAACGAAGGAATGGATCCCTTCAGT TATGGATTGAACAAAGCTACGGATCCAAGTCAATACAAGAATGCAACTTCGATTATACAAACTTTGGTGGATATC GTGTCGAAGAACGGTAACTTTTTGTTAGATGTTGGGCCGAACGCTGAAGGCGAAATCATTGCACCAATGGCCAAT AACTTATTGGACGCTGGGAATTGGCTTGAATATAGTGGGGAGTGTGTGTATGACACGGATTTCTGGTTTCAAAGC TCGCAAGACCAAGTAGAGAACGATCTAAATTTGGCTCCCGCTCGTTTCACCACGACTCCAACATCGCTCTGCGTC ATCACCTTTAACGAGCCATCATCTGGCAAGTTGGTCATACAAAAGCGACTGCCGATATTACCGGGTGATCAAGTA TTCCTACAACACCCAAACGCGACTATCCGCGGCACTGAGCTCGAATGGAGCGTAGGGGAAACTGGAAAGTTAACA ATAAGTGTCACTGAAGATCAGACGAAAGATGTGAAAAACGCTTGGGCTTTTAAGATTGTATATGCCAAAACGTAA |
| Transcript | >Agabi119p4|020200 ATGGGAGTTTCATCCAAGGGCTTGGTATTAGGCCTCTTCCTACCGTCCTTCGTCAATATCATCTTCGGCGCGATA GCTCTTGGCCAAATCACGACTGTTCCTTTACCGCTGAACATCATTTTTGATAACCAAGCTTCATCCCCGGATGGT TCTGCCAACTTTGATGGACACGGCGCGAGTTTTGATAGTCGGTTTCTTCCTTCTGGCCCGTGGATCCATGATAAT GTCCAGTATGAACTCCCTGAGACGTGGGGAACTGGCACCGATAATGTGATCACTGACGGCCAGATTTTGGGCATC GAGGACAGCTACGTACACGAACTGCACTTTCTATATGCTGGCGATATCAATGGTGGAGAATTTGTGAGGAATTTT GTCTTGAATTTTGCGGACAATTCGACCTTCACTGTACAATTATATGCGAAGAACTGGTGGAGATGGCCAAACTTG AATAAAGGAGCAATTCAGACACCGTATCATTTTGAACCTAACGGGGTCAAGAACTTCAACGCGTCTCAAATATAC CAATGGTCGACTGCAGTTCCTTCAGAATCGAAGCTTCGATCTATAACTTTTCCACCCAGCAACCCTGCACGAAGG CTTCATCTTTTCGCAATGAGTTATACACCTTCCACAGATCCACCTGCGTCGTCGTCAACAAATTCTAGCGACGCT AAAATCTCAGTCCGTCGAGCTCGGTTTACAACTAAATGGGAACTCATTCACAATCAAAGGGCTCAAATCGTCGAG ATAACACTCGCAAATCTCTTTCCAACATTTACACTTTCCAAATCAACATCAATCACATCGAATCACAGTATTAGT GTTACAGGAAATGGGATTGAGACTGTCCGTCCTGGATCGCTTGTTCGATTAGTCCCTGGTGATCAAGCTCGCGTT GATGTTGTAGTGACTGGGACGAGCGCTTCGAATGCTGGAAAGAATGCAACTGTGGAAATTAGAGATAATCAAGGT AATATTGTAGGTTCGTTTGGAGGGTGGCAGATCTCGCCGTTGGTTGAAGAATGGACTGCCGATGCTGATGTTCTT GAGAAGCATGAGGTGCCCACATGGTGGAAGAAGGCAAAGTATGGGATATTCATTCATTGGGGCGTCTATAGTCAC CCAGCATTTGCGCCCAATGGCACTTATGCCGAGTGGTATGACTGGAATCTTCATAATCCCCCTGATGCGAGTAGC CCAGTATGGGACCATCATCTCCAAACTTTCGGCCCGACCATCGTATATGATGATTTCATCCCGAACTTTACGGCA AGCAAATTTAATGCCAGCGCGTGGCTTGACTTGTTCGATAAAGCAGGGGCTAAATATTTTGTCTTTGTCACTAAA CATCATGATGGTTATGCGCTTTTCGATACGCAGAACACGACGCACAGAAGTAGCGTCCACCTCGGCCCTAAACGC GATTTCCTACAAGATTTGATGGAAACAGCTAAACGTGAGAAACCCAACATGCATAGAGGAACGTACTATTCTTTA CCAGAATGGTTCAATCCTGATTATGCGAAATACGGATTCGGTTCTTGGCCAGGTGGATTAGCTCATAACGCCTTC AATAATAGTCTATTGGAGCCATACACCGGGCATCTCGATATCGATGACTATATCGATGATCTCCAAGTCCCTCAA ATGCTAGATATTGCTCTGAAATACGACACGGAAATTATGTGGTGTGACATTGGAGGCCCAAATAAAACTTTAGAC GTCTCGGCCCAGTTTTACAATCACGCTCAAAACCAAGGTCGTCAAGTCACCATCAACAACCTTCCGGATTTTGAC ACACCCGAATATGCAACTTTTGGCGCCATTCAGACTCGAGATTGGGAATCGAACGAAGGAATGGATCCCTTCAGT TATGGATTGAACAAAGCTACGGATCCAAGTCAATACAAGAATGCAACTTCGATTATACAAACTTTGGTGGATATC GTGTCGAAGAACGGTAACTTTTTGTTAGATGTTGGGCCGAACGCTGAAGGCGAAATCATTGCACCAATGGCCAAT AACTTATTGGACGCTGGGAATTGGCTTGAATATAGTGGGGAGTGTGTGTATGACACGGATTTCTGGTTTCAAAGC TCGCAAGACCAAGTAGAGAACGATCTAAATTTGGCTCCCGCTCGTTTCACCACGACTCCAACATCGCTCTGCGTC ATCACCTTTAACGAGCCATCATCTGGCAAGTTGGTCATACAAAAGCGACTGCCGATATTACCGGGTGATCAAGTA TTCCTACAACACCCAAACGCGACTATCCGCGGCACTGAGCTCGAATGGAGCGTAGGGGAAACTGGAAAGTTAACA ATAAGTGTCACTGAAGATCAGACGAAAGATGTGAAAAACGCTTGGGCTTTTAAGATTGTATATGCCAAAACGTAA |
| Gene | >Agabi119p4|020200 ATGGGAGTTTCATCCAAGGGCTTGGTATTAGGCCTCTTCCTACCGTCCTTCGTCAATATCATCTTCGGCGCGATA GCTCTTGGCCAAATCACGACTGTTCCTTTACCGCTGAACATCATTTTTGATAACCAAGCTTCATCCCCGGATGGT TCTGCCAACTTTGATGGACACGGCGCGAGTTTTGATAGTCGGTTTCTTCCTTCTGGCCCGTGGATCCATGATAAT GTCCAGGTTTGGAGCATTTACTCTTCGGAAATCTTCTTTCTCAATGTAACGTTGCAGTATGAACTCCCTGAGACG TGGGGAACTGGCACCGATAATGTGATCACTGACGGCCAGATTTTGGGCATCGAGGACAGCTACGTACACGAACTG CACTTTCTATATGCTGGCGATATCAATGGTGGAGAATTTGTGAGGAATTTTGTCTTGAATTTTGCGGACAATTCG ACCTTCACTGTACAATGTAAGCGTATCCCTCTCTGTTGAGTTGCAACTCACGAGAACCCGGACTAAACAGTATAT GCGAAGAACTGGTGGAGATGGCCAAACTTGAATAAAGGAGCAATTCAGACGTGAGCTACTCAGAGTTGCTAAAAT TCCGACAAACCATCAGACTCCATTTGTAGACCGTATCATTTTGAACCTAACGGGGTCAAGAACTTCAACGCGTCT CAAATATACCAATGGTCGACTGCAGTTCCTTCAGAATCGAAGCTTCGATCTATAACTTTTCCACCCAGCAACCCT GCACGAAGGCTTCATCTTTTCGCAATGAGTTATACACCTTCCACAGATCCACCTGCGTCGTCGTCAACAAATTCT AGCGACGCTAAAATCTCAGTCCGTCGAGCTCGGTTTACAACTAAATGGGAACTCATTCACAATCAAAGGGCTCAA ATCGTCGAGATAACACTCGCAAATCTCTTTCCAACATTTACACTTTCCAAATCAACATCAATCACATCGAATCAC AGTATTAGTGTTACAGGAAATGGGATTGAGACTGTCCGTCCTGGATCGCTTGTTCGATTAGTCCCTGGTGATCAA GCTCGCGTTGATGTTGTAGTGACTGGGACGAGCGCTTCGAATGCTGGAAAGAATGCAACTGTGGAAATTAGAGAT AATCAAGGTAATATTGTAGGTTCGTTTGGAGGGTGGCAGATCTCGCCGTTGGTTGAAGAATGGACTGCCGATGCT GATGTTCTTGAGAAGCATGAGGTGCCCACATGGGTGAGTCATTTAGCGCATCACTTATAGCGCCGACCTCCTGAT CTTTTCGTAGTGGAAGAAGGCAAAGTATGGGATATTGTAAGTTTTGACTTTATCCCTTCATCCTATCGAGATGCT CGAACTTACGTGAAAATTCTAGCATTCATTGGGGCGTCTATAGTCACCCAGCATTTGTGTGTCAATCTATACTTT GACAAGGAACAGTTGAGAGTAAAAATTGTATTTATGTAGGCGCCCAATGGCACTTATGCCGAGTGGTATGAGTAA GTATCAAGATGTCTTTCGCTGAAAGTATCTTCCTCACAGCGAGAGCCTGGCTGACATTTCATTGATAGCTGGAAT CTTCATAATCCCCCTGATGCGAGTAGCCCAGTATGGGACCATCATCTCCAAACTTTCGGCCCGGTGGGAAAGAGC CGTTATGATTCATAAAATTAACTGATGGCCGCTCCTCAGACCATCGTATATGATGATTTCATCCCGAACTTTACG GCAAGCAAATTTAATGCCAGCGCGTGGCTTGACTTGTTCGATAAAGCAGGGGCTAAATATTTTGTCTTTGTCACT GTGAGTTTTACCCTCACTAAATAAGCTCTTTGTTTACCTCTCCTTTTCTTCTTCAGAAACATCATGATGGTTATG CGCTTTTCGATACGCAGAACACGACGCACAGAAGTAGCGTCCACCTCGGCCCTAAACGCGATTTCCTACAAGATT TGATGGAAACAGCTAAACGTGAGAAACCCAACATGCATAGAGGAACGTACTATTCTTTACCAGAATGGTAAATAA ATCAAGATCCACTTACGTCGAGATGATTTCATTGATAAGTGATAGGTTCAATCCTGATTATGCGAAATACGGATT CGGTTCTTGGCCAGGTGGATTAGCTCATAACGCCTTCAATAATAGTCTATTGGAGCCATACACCGGGCATCTCGA TATCGATGACTATATCGATGATCTCCAAGTCCCTCAAATGCTAGATATTGCTCTGAAATACGACACGGAAATTAT GGTCAGTAAGCCCTATTCCGTTGATATCGGTGCAAAAAACGCAGTTTACGAATTAACGAACACATTTATGGGCAG TGGTGTGACATTGGAGGCCCAAATAAAACTTTAGACGTCTCGGCCCAGTTTTACAATCACGCTCAAAACCAAGGT CGTCAAGTCACCATCAACAACCGTAAGTTTCTATTCTCCGTTCATTAACATTTTTTTTTAGAGAGAATGAAAGAT TACTAACGTAAACCCCGAATGTTGCGGAGCAGTTCCGGATTTTGACACACCCGAATATGCAACTTTTGGCGCCAT TCAGACTCGAGATTGGGAATCGAACGAAGGAATGGATCCCTTCAGTTATGGATTGAACAAAGCTACGGATCCAAG TCAATACAAGAATGCAACTTCGATTATACAAACTTTGGTGGATATCGTGTCGAAGAACGGTAACTTGTACGCGTC CTTTTTTTCCGCGTATATTAATTTGGATTTAACAATATATATATAGTTTGTTAGATGTTGGGCCGAACGCTGAAG GCGAAATCATTGCACCAATGGCCAATAACTTATTGGACGCTGGGAATTGGCTTGAATATAGTGGGGAGTGTGTGT ATGACACGGTTCGTCGAATTAATCATAGCGCTGCACTGATGTATGACCATGTTACGTAGGATTTCTGGTTTCAAA GCTCGCAAGACCAAGTAGAGAACGATCTAAATTTGGCTCCCGCTCGTTTCACCACGACTCCAACATCGCTCTGCG TCATCACCTTTAACGAGCCATCATCTGGCAAGTTGGTCATACAAAAGCGACTGCCGATATTACCGGGTGATCAAG TATTCCTACAACACCCAAACGCGACTATCCGCGGCACTGAGCTCGAATGGAGCGTAGGGGAAACTGGAAAGTTAA CAATAAGTGTCACTGAAGATCAGACGAAAGATGTGAAAAACGCTTGGGCTTTTAAGATTGTATATGCCAAAACGT AA |