Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|019780
Gene name
Locationscaffold_10:1365086..1366831
Strand+
Gene length (bp)1745
Transcript length (bp)1146
Coding sequence length (bp)1146
Protein length (aa) 382

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01263 Aldose_epim Aldose 1-epimerase 9.0E-50 36 374

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4AMB9|GALM_ARTBC Probable aldose 1-epimerase ARB_05372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05372 PE=1 SV=1 18 377 4.0E-52
sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 28 378 7.0E-42
sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 28 378 3.0E-41
sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=1 SV=1 43 378 1.0E-39
sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 43 378 2.0E-39
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Swissprot ID Swissprot Description Start End E-value
sp|D4AMB9|GALM_ARTBC Probable aldose 1-epimerase ARB_05372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05372 PE=1 SV=1 18 377 4.0E-52
sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 28 378 7.0E-42
sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 28 378 3.0E-41
sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=1 SV=1 43 378 1.0E-39
sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 43 378 2.0E-39
sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 38 378 2.0E-38
sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 38 378 2.0E-38
sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 38 378 1.0E-34
sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1 19 376 1.0E-30
sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 19 376 1.0E-30
sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2 20 377 6.0E-25
sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL10 PE=1 SV=2 39 377 1.0E-20
sp|P53757|YN9A_YEAST Uncharacterized isomerase YNR071C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR071C PE=1 SV=1 39 378 6.0E-16
sp|P09609|GAL10_KLULA Bifunctional protein GAL10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL10 PE=2 SV=2 37 376 9.0E-15
sp|P38893|YH10_YEAST Uncharacterized isomerase YHR210C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR210C PE=3 SV=1 20 378 8.0E-12
sp|Q9HDU3|GAL10_SCHPO Bifunctional protein gal10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gal10 PE=3 SV=1 61 378 7.0E-11
sp|P21955|GALM_STRTR Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1 27 252 5.0E-10
sp|P40801|GAL10_PACTA Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1 60 370 1.0E-06
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GO

GO Term Description Terminal node
GO:0016853 isomerase activity Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0071704 organic substance metabolic process No
GO:0008150 biological_process No
GO:0008152 metabolic process No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|019780
MKGFIHLISTLACITLAAANAPGWPFDVTEINAPDGSVKAKFVSLGATMTELWVKDRDGNARDVILGYDDNTLLL
TDPDHPVFNAIVGRYANRIKNGTFSIPTTKEAQPPGAGVWQLPTNDHDGQVTLHSSDYGWDRKNWTVHSRSPTSV
TYKYVDPAGEDGQGFPGEVTVYATHEVSNGVLRSSVLAHATEKTPIMTTQHVYWNLDAFQNGGDTALNHYLTLDA
SRIVHLDGNAIPYGDFIETSGTIFDFKNGKMIGENFNQTVDNCGTGCQGFDHCWIYDQSETRRAGTSLWSNNSGI
RVDISTNQPAVQMYTAYWLNTPRKEVHGGPSLVYDSWSAVAIEQQGYVDAVNTPEWNVNQIYGPREDYEWSATYK
FSIVDA*
Coding >Agabi119p4|019780
ATGAAAGGTTTTATTCATTTGATCTCCACTCTAGCTTGTATCACACTAGCCGCTGCGAATGCGCCAGGTTGGCCA
TTTGACGTGACCGAAATCAATGCTCCCGATGGCTCTGTCAAAGCAAAATTTGTTTCTCTCGGCGCAACTATGACC
GAACTCTGGGTTAAAGACAGGGATGGGAATGCCCGAGATGTCATTCTTGGATATGATGATAATACTCTGCTTTTA
ACCGACCCTGACCACCCAGTGTTCAATGCTATCGTGGGAAGATATGCTAACCGCATTAAAAACGGAACCTTCTCT
ATCCCAACTACAAAGGAAGCTCAGCCACCTGGCGCCGGAGTTTGGCAGCTCCCTACCAACGACCATGATGGTCAG
GTTACGCTCCATAGCAGCGATTATGGCTGGGATAGGAAGAATTGGACAGTCCATTCACGTTCACCTACCAGTGTC
ACGTACAAATACGTGGATCCAGCAGGCGAGGATGGCCAAGGTTTCCCGGGAGAGGTGACCGTATACGCCACTCAT
GAAGTATCCAATGGCGTGCTTAGGTCCAGTGTCCTCGCCCATGCCACAGAAAAGACCCCGATTATGACTACGCAA
CACGTTTACTGGAACCTTGACGCCTTCCAGAATGGCGGGGACACTGCGCTTAACCACTACCTCACTCTTGACGCC
TCCAGGATTGTCCACCTTGATGGGAACGCTATTCCTTACGGCGATTTTATTGAAACTTCCGGTACCATTTTCGAC
TTCAAGAACGGGAAAATGATTGGTGAGAACTTTAATCAAACAGTTGATAACTGTGGAACGGGCTGCCAAGGGTTT
GATCACTGTTGGATCTATGATCAAAGTGAAACCAGACGTGCTGGAACGTCCTTGTGGAGCAATAACTCTGGTATC
AGGGTCGATATCTCTACAAATCAGCCAGCGGTTCAAATGTATACCGCTTACTGGCTCAACACGCCTCGGAAGGAA
GTCCACGGAGGCCCCTCTCTTGTATATGACTCCTGGTCGGCAGTAGCAATCGAGCAACAAGGTTACGTTGATGCT
GTCAACACCCCGGAATGGAATGTGAACCAAATCTACGGACCACGTGAAGACTATGAGTGGAGCGCCACGTATAAG
TTTTCTATTGTGGATGCCTGA
Transcript >Agabi119p4|019780
ATGAAAGGTTTTATTCATTTGATCTCCACTCTAGCTTGTATCACACTAGCCGCTGCGAATGCGCCAGGTTGGCCA
TTTGACGTGACCGAAATCAATGCTCCCGATGGCTCTGTCAAAGCAAAATTTGTTTCTCTCGGCGCAACTATGACC
GAACTCTGGGTTAAAGACAGGGATGGGAATGCCCGAGATGTCATTCTTGGATATGATGATAATACTCTGCTTTTA
ACCGACCCTGACCACCCAGTGTTCAATGCTATCGTGGGAAGATATGCTAACCGCATTAAAAACGGAACCTTCTCT
ATCCCAACTACAAAGGAAGCTCAGCCACCTGGCGCCGGAGTTTGGCAGCTCCCTACCAACGACCATGATGGTCAG
GTTACGCTCCATAGCAGCGATTATGGCTGGGATAGGAAGAATTGGACAGTCCATTCACGTTCACCTACCAGTGTC
ACGTACAAATACGTGGATCCAGCAGGCGAGGATGGCCAAGGTTTCCCGGGAGAGGTGACCGTATACGCCACTCAT
GAAGTATCCAATGGCGTGCTTAGGTCCAGTGTCCTCGCCCATGCCACAGAAAAGACCCCGATTATGACTACGCAA
CACGTTTACTGGAACCTTGACGCCTTCCAGAATGGCGGGGACACTGCGCTTAACCACTACCTCACTCTTGACGCC
TCCAGGATTGTCCACCTTGATGGGAACGCTATTCCTTACGGCGATTTTATTGAAACTTCCGGTACCATTTTCGAC
TTCAAGAACGGGAAAATGATTGGTGAGAACTTTAATCAAACAGTTGATAACTGTGGAACGGGCTGCCAAGGGTTT
GATCACTGTTGGATCTATGATCAAAGTGAAACCAGACGTGCTGGAACGTCCTTGTGGAGCAATAACTCTGGTATC
AGGGTCGATATCTCTACAAATCAGCCAGCGGTTCAAATGTATACCGCTTACTGGCTCAACACGCCTCGGAAGGAA
GTCCACGGAGGCCCCTCTCTTGTATATGACTCCTGGTCGGCAGTAGCAATCGAGCAACAAGGTTACGTTGATGCT
GTCAACACCCCGGAATGGAATGTGAACCAAATCTACGGACCACGTGAAGACTATGAGTGGAGCGCCACGTATAAG
TTTTCTATTGTGGATGCCTGA
Gene >Agabi119p4|019780
ATGAAAGGTTTTATTCATTTGATCTCCACTCTAGCTTGTATCACACTAGCCGCTGCGAATGCGCCAGGTTGGGTG
CGTATTTACATGTTTCTTCTATTTTCTCAGACTGAGAAACGGTGCTTTTTAGCCATTTGACGTGACCGAAATCAA
TGCTCCCGATGGCTCTGTCAAAGCAAAATTTGTTTCTCTCGGCGCAACTATGACCGAACTCTGGGTTAAAGACAG
GGATGGGAATGCCCGAGATGTCATTCTTGGATATGATGATAATGTTCGTTCTTCTCTACCCGCCTTCTATGTTGT
TTTATGAGGCATATCACAGACTCTGCTTTTAACCGACCCTGACCACCCAGTGTTCAATGCTATCGTGGGAAGATA
TGCTAACCGCATTAAAAACGGTGTGTATTCAGTTCTTTTGCCCCGCTGTCACAGTTCAACTCATACAGTAATGAA
CAGGAACCTTCTCTATCCCAACTACAAAGGAAGCTCAGCCACCTGGCGCCGGAGTTTGGCAGCTCCCTACCAACG
ACCATGATGGTGAGCCAGTCTTAGTTCTATCGATGTTATTCTAATACCATACGTCACTAGGTCAGGTAGGCACCA
GTCCCTCATGTCCCTGCCGAGCCACGCGAATTCATATGCTTTAGGTTACGCTCCATAGCAGCGATTATGGCTGGG
ATAGGAAGAATTGGACAGTCCATTCACGTTCACCTACCAGTGTCACGTACAAATACGTGGATCCAGCAGGCGAGG
ATGGCCAAGGTTTCCCGGGAGAGGTGACCGTATACGTGAGCCCTGACCATACATTTGCTGGGAAAGCTGCGTTAA
TCTGCTCTGTTAGGCCACTCATGAAGTATCCAATGGCGTGCTTAGGTCCAGTGTCCTCGCCCATGCCACAGAAAA
GGTTTGTCTCTCACTAGTACTTTAATTCATACCCTGAATTGTATAAACAGACCCCGATTATGACTACGCAACACG
TTTACTGGTTAGTCTCCTATTTTCTTGGAAGGAAGCAAGGACAGAGCTTGATCCAACTTTGTTGCAGGAACCTTG
ACGCCTTCCAGAATGGCGGGGACACTGCGCTTAACCACTACCTCACTCTTGACGCCTCCAGGATTGTCCACCTTG
ATGGGAACGCTATTCCTTACGGCGATTTTATTGAAACTTCCGGTACCATTTTCGACTTCAAGAACGGGAAAATGA
TTGGTGAGAACTTTAATCAAACAGTTGATAACTGTGGAACGGGTTTGTCGACTTTTTTCCATCCTTTAGGCTAGG
TAAACTGATACATACTCTCTTCAGGCTGCCAAGGGTTTGATCACTGTTGGATCTATGATCAAAGTGAAACCAGAC
GTGCTGGAACGTCCTTGTGGAGCAATAACTCTGGTATCAGGTGGGTTTCTTATATAGTATATTCAGCCCAGTCAC
CTATGTACTCATCATTCGTTGAATAGGGTCGATATCTCTACAAATCAGCCAGCGGTTCAAATGTATACCGCTTAC
TGGCTCAACACGCCTCGGAAGGAAGTCCACGGAGGCCCCTCTCTTGTATATGACTCCTGGTCGGCAGTAGCAATC
GAGCAACAAGGTTACGTTGATGCTGTCAACACCCCGGAATGGAATGTGAACCAAATCTGTGAGTTTTTGGTCATC
CGCCTTATTAGCATATCACTGAGATAATTGTAGACGGACCACGTGAAGACTATGAGTGGAGCGCCACGTATAAGT
TTTCTATTGTGGATGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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