© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Agabi119p4|019330 |
| Gene name | |
| Location | scaffold_10:444901..446026 |
| Strand | - |
| Gene length (bp) | 1125 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 768 |
| Protein length (aa) | 256 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 1.7E-05 | 120 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|F7J1C8|E3GAL_FLAVE | Galactan endo-beta-1,3-galactanase OS=Flammulina velutipes GN=EN3GAL PE=1 SV=1 | 18 | 254 | 1.0E-111 |
| sp|O33680|EXSH_RHIME | Endo-1,3-1,4-beta-glycanase ExsH OS=Rhizobium meliloti (strain 1021) GN=exsH PE=1 SV=1 | 65 | 250 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|019330 MFLPTAAAFLFFAASTGVQAATVIPSNSFSSVSTFQTYWNYLYPWGSDHNGSARMRGSSSDHSHINPASGTLSLI ATPTSNPSPPTSGSDPHPAIHYASGAVHAKSQITVTRSTGYTISGEFSAPTARGTWPAFWLTAVNSWPPEVDIGE WKGTNQNWFNTFNTSSSVKSNLVNWPGDLSFHSLKAVLSAESNGADVRIDFYMDNTLRTTQFGKGFVGKPLWLII NLQMEGSAGSPGPSGTTTYKIRNVQVTNTA* |
| Coding | >Agabi119p4|019330 ATGTTCTTACCGACTGCTGCTGCGTTCCTTTTCTTCGCTGCTTCTACAGGAGTTCAGGCTGCGACGGTCATACCG TCCAACTCTTTCTCCTCGGTCTCAACCTTCCAGACCTATTGGAACTATCTCTATCCATGGGGTTCAGACCACAAT GGCAGTGCAAGGATGAGGGGGAGCTCATCTGACCATAGTCATATCAACCCAGCGTCGGGAACGCTTAGTTTGATA GCTACGCCAACATCAAACCCCTCGCCCCCAACGAGTGGTTCTGACCCTCACCCGGCAATACACTACGCTAGTGGC GCAGTCCATGCAAAAAGTCAGATCACGGTGACCAGATCGACCGGATATACTATCTCCGGTGAATTTAGTGCCCCA ACAGCCAGAGGCACCTGGCCCGCATTCTGGTTGACTGCCGTGAATAGCTGGCCTCCTGAAGTCGATATCGGTGAA TGGAAAGGCACAAATCAAAACTGGTTCAACACCTTCAACACCTCTTCTAGCGTCAAATCCAACTTAGTCAACTGG CCCGGTGACCTCTCCTTCCATTCACTCAAAGCAGTGCTCTCAGCAGAGTCAAATGGAGCCGATGTCAGGATTGAC TTTTACATGGACAACACCCTTCGCACGACTCAATTTGGTAAAGGATTCGTCGGAAAACCCCTCTGGTTGATTATT AACTTGCAGATGGAGGGATCCGCGGGCTCTCCCGGCCCGTCGGGTACGACGACGTACAAAATTCGCAACGTGCAA GTCACTAACACTGCATGA |
| Transcript | >Agabi119p4|019330 ATGTTCTTACCGACTGCTGCTGCGTTCCTTTTCTTCGCTGCTTCTACAGGAGTTCAGGCTGCGACGGTCATACCG TCCAACTCTTTCTCCTCGGTCTCAACCTTCCAGACCTATTGGAACTATCTCTATCCATGGGGTTCAGACCACAAT GGCAGTGCAAGGATGAGGGGGAGCTCATCTGACCATAGTCATATCAACCCAGCGTCGGGAACGCTTAGTTTGATA GCTACGCCAACATCAAACCCCTCGCCCCCAACGAGTGGTTCTGACCCTCACCCGGCAATACACTACGCTAGTGGC GCAGTCCATGCAAAAAGTCAGATCACGGTGACCAGATCGACCGGATATACTATCTCCGGTGAATTTAGTGCCCCA ACAGCCAGAGGCACCTGGCCCGCATTCTGGTTGACTGCCGTGAATAGCTGGCCTCCTGAAGTCGATATCGGTGAA TGGAAAGGCACAAATCAAAACTGGTTCAACACCTTCAACACCTCTTCTAGCGTCAAATCCAACTTAGTCAACTGG CCCGGTGACCTCTCCTTCCATTCACTCAAAGCAGTGCTCTCAGCAGAGTCAAATGGAGCCGATGTCAGGATTGAC TTTTACATGGACAACACCCTTCGCACGACTCAATTTGGTAAAGGATTCGTCGGAAAACCCCTCTGGTTGATTATT AACTTGCAGATGGAGGGATCCGCGGGCTCTCCCGGCCCGTCGGGTACGACGACGTACAAAATTCGCAACGTGCAA GTCACTAACACTGCATGA |
| Gene | >Agabi119p4|019330 ATGTTCTTACCGACTGCTGCTGCGTTCCTTTTCTTCGCTGCTTCTACAGGAGTTCAGGCTGCGACGGTCATACCG TCCAACTCTTTCTCCTCGGTCTCAACCTTCCAGACCTATTGGAACTATCTCTATCCATGGGGTTCAGACCACAAT GGCAGTACGTCTGTTATTGCTTTGCCATTATACATCATTCATCTGTATCATAAGGTGCAAGGATGAGGGGGAGCT CATCTGACCATAGTCATATCAACCCAGCGTCGGGAACGCTTAGTTTGATAGCTACGCCAACATCAAACCCCTCGC CCCCAACGAGTGGTTCTGACCCTCACCCGGCAATACACTACGCTAGGTAATATCAGAGAGAGAAATAATATCGTC GACCGAATTTAACGCTAACGATCACCCTTATAATTAGTGGCGCAGTCCATGCAAAAAGTCAGATCACGGTGACCA GATCGACCGGATATACTATCTCCGGTGAATTTAGTGCCCCAACAGCCAGAGGCACCTGGCCCGCATTCTGGTGAA TAAACACGCAAGATTTGCTTTTTTGACATCATACTCACTTGGCTATGTCCCGAATTGCAGGTTGACTGTAAGTTC GACTGTCACCTCTGATATATCCTTTTCGCGTCTTACAACTTACCTTGCTTCACTAGGCCGTGAATAGCTGGCCTC CTGAAGTCGATATCGGTGAATGGAAAGGCACAAATCAAAACTGGTTCAACACCTTCAACACCTCTTCTAGCGTCA AATCCAACTTAGTCAACTGGCCCGGTGACCTCTCCTTCCATTCACTCAAAGCAGTGCTCTCAGCAGAGTCAAATG GAGCCGATGTCAGGATTGACTTTTACATGGACAACACCCTTCGCACGACTCAATTTGGTAAAGGATTCGTCGGAA AACCCCTCTGGTTGTATGTGATCTTTCGCTACTTTTTATTGTAAAATGGTGGGCTGATGTTCTTAATGATAGGAT TATTAACTTGCAGGTATGCACGGCCTATTTCATATACTCAAGCCAGCAGATTGAATGTTGCATTAGATGGAGGGA TCCGCGGGCTCTCCCGGCCCGTCGGGTACGACGACGTACAAAATTCGCAACGTGCAAGTCACTAACACTGCATGA |