© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|016230 |
| Gene name | |
| Location | scaffold_10:375547..376000 |
| Strand | + |
| Gene length (bp) | 453 |
| Transcript length (bp) | 327 |
| Coding sequence length (bp) | 327 |
| Protein length (aa) | 109 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01185 | Hydrophobin | Fungal hydrophobin | 2.1E-11 | 31 | 106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13300|HYP3_AGABI | Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 | 1 | 108 | 3.0E-11 |
| sp|P04158|SC1_SCHCO | Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 | 4 | 108 | 5.0E-08 |
| sp|O74300|SC6_SCHCO | Hydrophobin-6 OS=Schizophyllum commune GN=SC6 PE=3 SV=1 | 22 | 105 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005199 | structural constituent of cell wall | Yes |
| GO:0009277 | fungal-type cell wall | Yes |
| GO:0005198 | structural molecule activity | No |
| GO:0030312 | external encapsulating structure | No |
| GO:0005618 | cell wall | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|016230 MYSKFALSVVSVFALSAAVAASPTGDIDSPCDVGTFYCCHGVQDAHTSTVTKIALLLHIDLGNVTGPVGLSCRDD IDSSSCTDTQPLCCTGENFLEGIIVAGCSSISL* |
| Coding | >Agabi119p4|016230 ATGTACTCCAAATTCGCTCTCTCCGTCGTTTCCGTTTTCGCTCTCAGCGCCGCTGTCGCAGCTTCACCTACTGGT GACATTGATTCCCCATGCGATGTTGGCACATTCTACTGCTGTCATGGTGTCCAAGATGCCCACACCTCGACCGTC ACTAAAATCGCTTTGTTGCTCCATATTGATCTTGGGAATGTTACTGGTCCAGTCGGTCTCTCCTGCCGTGACGAT ATCGATAGTAGCAGCTGCACTGATACTCAGCCTCTTTGCTGCACTGGTGAAAACTTCTTGGAAGGCATCATCGTT GCTGGCTGCTCCTCCATCAGCCTCTAG |
| Transcript | >Agabi119p4|016230 ATGTACTCCAAATTCGCTCTCTCCGTCGTTTCCGTTTTCGCTCTCAGCGCCGCTGTCGCAGCTTCACCTACTGGT GACATTGATTCCCCATGCGATGTTGGCACATTCTACTGCTGTCATGGTGTCCAAGATGCCCACACCTCGACCGTC ACTAAAATCGCTTTGTTGCTCCATATTGATCTTGGGAATGTTACTGGTCCAGTCGGTCTCTCCTGCCGTGACGAT ATCGATAGTAGCAGCTGCACTGATACTCAGCCTCTTTGCTGCACTGGTGAAAACTTCTTGGAAGGCATCATCGTT GCTGGCTGCTCCTCCATCAGCCTCTAG |
| Gene | >Agabi119p4|016230 ATGTACTCCAAATTCGCTCTCTCCGTCGTTTCCGTTTTCGCTCTCAGCGCCGCTGTCGCAGCTTCACCTACTGGT GACATTGATTCCCCATGCGATGTTGGCACATTCTACTGCTGTTAGTAGTATTGATCCAATCGTGCCAATCTCGTT TTCAAATCTCACACGTTTATTTTGAAGGTCATGGTGTCCAAGATGCCCACACCTCGACCGTCACTAAAATCGCTT TGTTGCTCCATATTGATCTTGGGAATGTTACTGGTCCAGTCGGTCTCTCCTGCCGTGACGATATCGATAGTAGCA GCTGCACTGATACTCAGCCTCTTTGCTGCACTGGTGAAAACTTCTGTGAGTTTCTTGTCATAGACATGGTAGTGT TTTAATGAGAATACTGATATATGCGTGTTATCAGTGGAAGGCATCATCGTTGCTGGCTGCTCCTCCATCAGCCTC TAG |