Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|013850
Gene name
Locationscaffold_01a:3217187..3218060
Strand+
Gene length (bp)873
Transcript length (bp)672
Coding sequence length (bp)672
Protein length (aa) 224

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04051 TRAPP Transport protein particle (TRAPP) component 1.2E-38 18 219

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1 95 221 8.0E-39
sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1 95 221 8.0E-39
sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1 95 221 2.0E-38
sp|O75865|TPC6A_HUMAN Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2 95 222 2.0E-29
sp|Q3T086|TPC6A_BOVIN Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1 97 221 2.0E-29
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1 95 221 8.0E-39
sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1 95 221 8.0E-39
sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1 95 221 2.0E-38
sp|O75865|TPC6A_HUMAN Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2 95 222 2.0E-29
sp|Q3T086|TPC6A_BOVIN Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1 97 221 2.0E-29
sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1 SV=1 95 222 1.0E-28
sp|Q09784|YA95_SCHPO Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G6.05c PE=1 SV=3 97 222 4.0E-26
sp|Q99394|TRS33_YEAST Trafficking protein particle complex subunit 33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS33 PE=1 SV=1 87 201 1.0E-20
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|013850
MAALSEPPQAFVDGAALDYFMMEMVTTLKASAAVATARAKKIEQEMVEAGLVPSSIPAPPPLPLKKESARDSVTS
LTSKSGSKAVVDEDEEALRSRLEYIGSHVGANITEKLCRDRGMFSDTLDIIKFICKDIWATFWDKQVDNLRTNHR
GIYVLQDNQFKPVTRLSSWEGRPEAIRRAKIYAAMPAGIIKGALSRLGYNATVTAEITSLPQCTFQIKLPKNA*
Coding >Agabi119p4|013850
ATGGCTGCCCTCTCAGAACCTCCTCAGGCTTTCGTCGACGGCGCCGCTCTCGACTACTTCATGATGGAAATGGTG
ACCACCCTCAAGGCCTCGGCAGCAGTCGCAACAGCCCGCGCAAAGAAAATCGAGCAGGAGATGGTCGAGGCCGGC
CTCGTACCTTCATCCATACCCGCTCCCCCTCCCCTGCCACTCAAGAAAGAGTCAGCCAGAGACAGCGTCACCAGT
CTCACATCCAAGAGCGGGAGCAAAGCTGTGGTGGACGAGGACGAAGAGGCACTCAGATCCCGCCTCGAGTATATC
GGCTCTCATGTCGGTGCAAACATCACAGAAAAACTATGTCGCGATCGAGGAATGTTTTCTGACACGCTTGACATC
ATCAAATTCATTTGCAAAGACATCTGGGCCACGTTTTGGGACAAACAAGTTGATAATCTACGAACAAATCACAGA
GGAATCTACGTTCTGCAAGACAACCAGTTCAAACCTGTGACACGACTCTCATCTTGGGAAGGCCGACCAGAAGCC
ATTCGACGAGCCAAGATCTATGCGGCCATGCCTGCAGGTATCATCAAAGGTGCTCTATCTCGACTAGGCTATAAT
GCTACCGTGACAGCAGAAATCACCTCTCTACCTCAATGTACATTCCAGATCAAACTACCCAAAAACGCTTGA
Transcript >Agabi119p4|013850
ATGGCTGCCCTCTCAGAACCTCCTCAGGCTTTCGTCGACGGCGCCGCTCTCGACTACTTCATGATGGAAATGGTG
ACCACCCTCAAGGCCTCGGCAGCAGTCGCAACAGCCCGCGCAAAGAAAATCGAGCAGGAGATGGTCGAGGCCGGC
CTCGTACCTTCATCCATACCCGCTCCCCCTCCCCTGCCACTCAAGAAAGAGTCAGCCAGAGACAGCGTCACCAGT
CTCACATCCAAGAGCGGGAGCAAAGCTGTGGTGGACGAGGACGAAGAGGCACTCAGATCCCGCCTCGAGTATATC
GGCTCTCATGTCGGTGCAAACATCACAGAAAAACTATGTCGCGATCGAGGAATGTTTTCTGACACGCTTGACATC
ATCAAATTCATTTGCAAAGACATCTGGGCCACGTTTTGGGACAAACAAGTTGATAATCTACGAACAAATCACAGA
GGAATCTACGTTCTGCAAGACAACCAGTTCAAACCTGTGACACGACTCTCATCTTGGGAAGGCCGACCAGAAGCC
ATTCGACGAGCCAAGATCTATGCGGCCATGCCTGCAGGTATCATCAAAGGTGCTCTATCTCGACTAGGCTATAAT
GCTACCGTGACAGCAGAAATCACCTCTCTACCTCAATGTACATTCCAGATCAAACTACCCAAAAACGCTTGA
Gene >Agabi119p4|013850
ATGGCTGCCCTCTCAGAACCTCCTCAGGCTTTCGTCGACGGCGCCGCTCTCGACTACTTCATGATGGAAATGGTG
ACCACCCTCAAGGCCTCGGCAGCAGTCGCAACAGCCCGCGCAAAGAAAATCGAGCAGGAGATGGTCGAGGCCGGC
CTCGTACCTTCATCCATACCCGCTCCCCCTCCCCTGCCACTCAAGAAAGAGTCAGCCAGAGACAGCGTCACCAGT
CTCACATCCAAGAGCGGGAGCAAAGCTGTGGTGGACGAGGACGAAGAGGCACTCAGATCCCGCCTCGAGTATATC
GGCTCTCATGTCGGTGCAAACATCACAGAAAAGTAATCTCTCCTATACGTCTTGCCTCACGTATACTTATTCGAC
TTTTTAGACTATGTCGCGATCGAGGAATGTTTTCTGACACGCTTGACATCATCAAATTCATTTGCAAAGACATCT
GGGCCACGTTTTGGGACAAACAAGTTGATAATCTACGAACAAATCACAGAGTATGCCACCACACACAGTTTGCGA
GACTGGTCGCCTGACCATCCCATCAGGGAATCTACGTTCTGCAAGACAACCAGTTCAAACCTGTGACACGACTCT
CATCTTGGGAAGGCCGACCAGAAGCCATTCGACGAGCCAAGATCGTAAGTCTTCCCCCTTCATTGTTTCCCACAT
CTATCTTGATTGTTGTCTAGTATGCGGCCATGCCTGCAGGTATCATCAAAGGTGCTCTATCTCGACTAGGCTATA
ATGCTACCGTGACAGCAGAAATCACCTCTCTACCTCAATGTAGGTCGTCTTATTCTTATCCCTTGCCCCATATCT
AATCTCAGCATAGGTACATTCCAGATCAAACTACCCAAAAACGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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