Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|012010
Gene name
Location	scaffold_01a:2885624..2887203
Strand	+
Gene length (bp)	1579
Transcript length (bp)	1236
Coding sequence length (bp)	1236
Protein length (aa)	412

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01161	PBP	Phosphatidylethanolamine-binding protein	1.4E-12	225	306

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q06678\|RM35_YEAST	54S ribosomal protein L35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL35 PE=1 SV=1	125	379	1.0E-23
sp\|O14341\|RM35_SCHPO	54S ribosomal protein L35, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2F12.10 PE=3 SV=2	125	373	2.0E-21
sp\|Q9FIT4\|BFT_ARATH	Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3 SV=1	170	312	1.0E-09
sp\|Q9SXZ2\|FT_ARATH	Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2	177	310	9.0E-07
sp\|P93003\|TFL1_ARATH	Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1	169	310	2.0E-06

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q06678\|RM35_YEAST	54S ribosomal protein L35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL35 PE=1 SV=1	125	379	1.0E-23
sp\|O14341\|RM35_SCHPO	54S ribosomal protein L35, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2F12.10 PE=3 SV=2	125	373	2.0E-21
sp\|Q9FIT4\|BFT_ARATH	Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3 SV=1	170	312	1.0E-09
sp\|Q9SXZ2\|FT_ARATH	Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2	177	310	9.0E-07
sp\|P93003\|TFL1_ARATH	Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1	169	310	2.0E-06
sp\|Q9XH42\|CET4_TOBAC	CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1	177	310	2.0E-06
sp\|Q9D9G2\|PEBP4_MOUSE	Phosphatidylethanolamine-binding protein 4 OS=Mus musculus GN=Pebp4 PE=1 SV=1	232	383	3.0E-06
sp\|P54187\|D2_ONCVO	Protein D2 (Fragment) OS=Onchocerca volvulus GN=D2 PE=2 SV=1	238	308	3.0E-06
sp\|Q9XH43\|CET2_TOBAC	CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1	177	310	3.0E-06
sp\|Q41261\|CEN_ANTMA	Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1	177	316	4.0E-06
sp\|Q9XH44\|CET1_TOBAC	CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1	169	310	5.0E-06
sp\|O16264\|PEBPH_CAEEL	Phosphatidylethanolamine-binding protein homolog F40A3.3 OS=Caenorhabditis elegans GN=F40A3.3 PE=3 SV=1	162	310	1.0E-05

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 62	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|012010 MSTTAPDAVTSSPGDNAPPPSEGTTSTRGRKKKCPPKRAPISHASPREWCRPLAPGVLPAYDLALDLLKADSAQI KSEAELLRTKIQAAEEQRLQETSKQGEDTLANLCRLDEELEVLRKKLKILEVQSEINLPDVRWKVANAMPNLAKT VDRHLLEQKWRREGDLDLLMERLHQMKVMPDVLSELHPSIDVRLTVSSLGGIPGKANKMVEPGTFLLPRQTFDPP KLYANVYHTDTRLYTLVLLDADVPDEANATLTTYLHWMQPNVPLSADHTSRILDLNKHTKYIPPHPQQGTNYHRY VLLLLQQPPRGASHYSLNIETRAKPNEPTSIHLDIPVVPDRRRRGFDLRSFMREWGFDMRQGGGAHMWREVWDEH VSTVYKDILKIPEPRYGRPRKPDPYAALKQTKRYNS*
Coding	>Agabi119p4\|012010 ATGAGCACGACCGCACCGGACGCAGTTACTTCGAGCCCTGGTGATAACGCACCTCCACCTTCAGAAGGTACCACC AGTACTCGGGGTCGTAAAAAGAAGTGCCCTCCGAAACGCGCACCTATTTCACATGCCTCACCCAGGGAATGGTGC AGACCTCTGGCTCCGGGTGTCCTTCCCGCGTATGACCTTGCCTTGGATTTGCTAAAGGCAGATAGTGCGCAAATC AAGTCAGAAGCAGAATTACTCCGTACCAAAATCCAGGCTGCAGAGGAACAAAGGCTACAAGAAACTTCCAAGCAG GGAGAAGATACTTTAGCAAATCTCTGCCGGCTGGACGAGGAGTTGGAAGTTTTGAGGAAGAAACTGAAGATTTTG GAAGTGCAATCTGAAATAAACCTCCCTGATGTTAGATGGAAGGTTGCAAACGCGATGCCCAACCTGGCTAAGACA GTTGACCGTCATCTCCTGGAACAGAAGTGGCGAAGGGAGGGTGATTTAGATTTGTTGATGGAACGTCTCCATCAA ATGAAAGTCATGCCGGACGTACTTTCCGAGCTTCATCCCTCGATAGATGTACGTTTAACGGTTAGCAGTCTCGGA GGAATTCCCGGCAAGGCCAATAAAATGGTAGAACCTGGGACATTCCTCCTCCCTAGACAGACCTTTGATCCACCA AAACTATACGCCAACGTTTACCACACAGACACTCGTCTGTATACTCTAGTTCTCTTAGATGCGGATGTTCCTGAT GAGGCGAACGCCACACTTACCACTTATTTACATTGGATGCAGCCTAATGTCCCCTTGTCGGCAGATCACACTTCT CGTATATTGGACTTGAACAAACACACAAAGTACATACCACCTCATCCACAGCAAGGGACAAATTACCACCGTTAC GTGTTACTTCTGCTCCAACAGCCTCCTCGCGGTGCTTCTCACTATTCCTTGAACATCGAAACTCGTGCCAAGCCG AATGAACCTACATCCATCCATTTGGACATACCTGTTGTACCTGATAGGAGGCGTAGAGGATTCGACCTTCGGAGT TTCATGAGGGAGTGGGGTTTCGATATGCGCCAAGGTGGAGGTGCACATATGTGGCGAGAGGTCTGGGATGAGCAT GTCTCCACTGTCTACAAAGATATTCTCAAAATACCGGAACCCCGCTATGGGCGCCCTCGGAAGCCGGATCCATAT GCTGCCCTGAAGCAAACGAAGAGATATAATAGTTAA
Transcript	>Agabi119p4\|012010 ATGAGCACGACCGCACCGGACGCAGTTACTTCGAGCCCTGGTGATAACGCACCTCCACCTTCAGAAGGTACCACC AGTACTCGGGGTCGTAAAAAGAAGTGCCCTCCGAAACGCGCACCTATTTCACATGCCTCACCCAGGGAATGGTGC AGACCTCTGGCTCCGGGTGTCCTTCCCGCGTATGACCTTGCCTTGGATTTGCTAAAGGCAGATAGTGCGCAAATC AAGTCAGAAGCAGAATTACTCCGTACCAAAATCCAGGCTGCAGAGGAACAAAGGCTACAAGAAACTTCCAAGCAG GGAGAAGATACTTTAGCAAATCTCTGCCGGCTGGACGAGGAGTTGGAAGTTTTGAGGAAGAAACTGAAGATTTTG GAAGTGCAATCTGAAATAAACCTCCCTGATGTTAGATGGAAGGTTGCAAACGCGATGCCCAACCTGGCTAAGACA GTTGACCGTCATCTCCTGGAACAGAAGTGGCGAAGGGAGGGTGATTTAGATTTGTTGATGGAACGTCTCCATCAA ATGAAAGTCATGCCGGACGTACTTTCCGAGCTTCATCCCTCGATAGATGTACGTTTAACGGTTAGCAGTCTCGGA GGAATTCCCGGCAAGGCCAATAAAATGGTAGAACCTGGGACATTCCTCCTCCCTAGACAGACCTTTGATCCACCA AAACTATACGCCAACGTTTACCACACAGACACTCGTCTGTATACTCTAGTTCTCTTAGATGCGGATGTTCCTGAT GAGGCGAACGCCACACTTACCACTTATTTACATTGGATGCAGCCTAATGTCCCCTTGTCGGCAGATCACACTTCT CGTATATTGGACTTGAACAAACACACAAAGTACATACCACCTCATCCACAGCAAGGGACAAATTACCACCGTTAC GTGTTACTTCTGCTCCAACAGCCTCCTCGCGGTGCTTCTCACTATTCCTTGAACATCGAAACTCGTGCCAAGCCG AATGAACCTACATCCATCCATTTGGACATACCTGTTGTACCTGATAGGAGGCGTAGAGGATTCGACCTTCGGAGT TTCATGAGGGAGTGGGGTTTCGATATGCGCCAAGGTGGAGGTGCACATATGTGGCGAGAGGTCTGGGATGAGCAT GTCTCCACTGTCTACAAAGATATTCTCAAAATACCGGAACCCCGCTATGGGCGCCCTCGGAAGCCGGATCCATAT GCTGCCCTGAAGCAAACGAAGAGATATAATAGTTAA
Gene	>Agabi119p4\|012010 ATGAGCACGACCGCACCGGACGCAGTTACTTCGAGCCCTGGTGATAACGCACCTCCACCTTCAGAAGGTACCACC AGTACTCGGGGTCGTAAAAAGAAGTGCCCTCCGAAACGCGCACCTATTTCACATGCCTCACCCAGGGAATGGTGC AGACCTCTGGCTCCGGGTGTCCTTCCCGCGTATGACCTTGCCTTGGATTTGCTAAAGGCAGATAGTGCGCAAATC AAGTCAGAAGCAGAATTACTCCGTACCAAAATCCAGGCTGCAGAGGAACAAAGGCTACAAGAAACTTCCAAGCAG GGAGAAGATACTTTAGCAAATCTCTGCCGGCTGGACGAGGAGTTGGAAGTTTTGAGGAAGAAACTGAAGATTTTG GAAGTGCAATCTGAAATAAACCTCCCTGATGTTAGATGGAAGGTTGCAAACGCGATGCGTATGTATTTCACCTTT TCCGTCTCAAATAGAAATAGAAGATCCTCACATTTTGATCCATTAGCCAACCTGGCTAAGACAGTTGACCGTCAT CTCCTGGAACAGAAGTGGCGAAGGGAGGGTGATTTAGATTTGTTGGTAGGTTTGTTTCATTTGCAATTACATCGC CCAGAAGATTTAACTATAAGTGTTACAGATGGAACGTCTCCATCAAATGAAAGTCATGCCGGACGTACTTTCCGA GCTTCATCCCTCGATAGATGTACGTTTAACGGTTAGCAGTCTCGGAGGAATTCCCGGCAAGGCCAATAAAATGGT AGAACCTGGGACATTCCTCCTCCCTAGACAGGCGAGTCATCCCTCTTGAGGTTGAATTTGGTTGCTAAAGCTAAA ATTCCGTTTCTAAAAAGACCTTTGATCCACCAAAACTATACGCCAACGTTTACCACACAGACACTCGTCTGTATA CTCTAGTTCTCTTAGATGCGGGTCCGTAGTGCGTTCCAATGACCGGCTGTTATATACTAATCTCGAAGTACAGAT GTTCCTGATGAGGCGAACGCCACACTTACCACTTATTTACATTGGATGCAGTATGTCATTGTCCCCGAAACCTTG ACGAAGCTTTGTATAACACTCTTCACAGGCCTAATGTCCCCTTGTCGGCAGATCACACTTCTCGTATATTGGACT TGAACAAACACACAAAGTACATACCACCTCATCCACAGCAAGGGACAAATTACCACCGTTACGTGTTACTTCTGC TCCAACAGCCTCCTCGCGGTGCTTCTCACTATTCCTTGAACATCGAAACTCGTGCCAAGCCGAATGAACCTACAT CCATCCATTTGGACATACCTGTTGTACCTGATAGGAGGCGTAGAGGATTCGACCTTCGGAGTTTCATGAGGGAGT GGGGTTTCGATATGCGCCAAGGTGGAGGTGCACATATGTGGCGAGAGGTCTGGGATGAGCATGTCTCCACTGTCT ACAAAGATATTCTCAGTGCGTAATTCACTCCATGCTGTTGGTATCCATTAATTTATTCATATCTTTTCCAGAAAT ACCGGAACCCCGCTATGGGCGCCCTCGGAAGCCGGATCCATATGCTGCCCTGAAGCAAACGAAGAGATATAATAG TTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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