© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|010120 |
| Gene name | |
| Location | scaffold_01a:2372250..2374537 |
| Strand | + |
| Gene length (bp) | 2287 |
| Transcript length (bp) | 1896 |
| Coding sequence length (bp) | 1896 |
| Protein length (aa) | 632 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | 5.3E-04 | 152 | 185 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.2E-03 | 241 | 271 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3SZ25|EED_BOVIN | Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1 | 116 | 337 | 1.0E-10 |
| sp|Q921E6|EED_MOUSE | Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1 | 116 | 337 | 1.0E-10 |
| sp|O75530|EED_HUMAN | Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2 | 116 | 337 | 1.0E-10 |
| sp|Q5ZKH3|EED_CHICK | Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1 | 116 | 337 | 1.0E-10 |
| sp|Q28DT7|EED_XENTR | Polycomb protein eed OS=Xenopus tropicalis GN=eed PE=2 SV=1 | 116 | 323 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3SZ25|EED_BOVIN | Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1 | 116 | 337 | 1.0E-10 |
| sp|Q921E6|EED_MOUSE | Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1 | 116 | 337 | 1.0E-10 |
| sp|O75530|EED_HUMAN | Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2 | 116 | 337 | 1.0E-10 |
| sp|Q5ZKH3|EED_CHICK | Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1 | 116 | 337 | 1.0E-10 |
| sp|Q28DT7|EED_XENTR | Polycomb protein eed OS=Xenopus tropicalis GN=eed PE=2 SV=1 | 116 | 323 | 2.0E-10 |
| sp|Q8UUP2|EEDA_XENLA | Polycomb protein eed-A OS=Xenopus laevis GN=eed-a PE=1 SV=1 | 116 | 337 | 4.0E-10 |
| sp|Q6AZS2|EEDB_XENLA | Polycomb protein eed-B OS=Xenopus laevis GN=eed-b PE=1 SV=2 | 116 | 323 | 5.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|010120 MDTTGAQPWYRDPSSDLPFELYSQFRLEGLHQDALRTVAFFPWGNESLGSLWDGSLATEQNYAKWNVVVNKFRDT VAIGGDTSVYILWLKRRKHPLRINIPETPEVDLIHSDTTQVAWVLSPNAIDQPLLILSRASLIWIYNPVSKGLSS YLRGHGGAITSLAVHPTRPHLFCSTSRDHSARIYDLNLAPHQGAKDSDVNPHWPPGTLPSRAGAPHGLHMNEAEG FGIARCIIVLMGGRSGGHEAAVLSASFHPQYPIIATCGVDRCIKLWHVNPRNSSQITREDKPLFSSSRIHRSRVL SVQWMSHDTLISHNPSAILRTDPTDEDNKDTYMVPGEIVVWTWLGLDRFFPPLYDDLKAEGRSQTVLRGCASDYQ ESSSFTMSANAAFPAIYPQLISPNVNVYQSPTHDPIALCTIPTVLPFEKKKEEHQKDKGAICVSDIHGDRSLSSL SVENLATGTPKDGETRVAGTVQIFHIPSLPHRLPSRFPLDAPPDGMPANAKVAEEGIADLPGLSRYHAELIERDP PPPFKSWTLEVPLSEFDLTSEATHAVGHGPAGGMTQAYDTRQRKVRSEKDETEKITGQEYTLKSIAEVPVSVQNA KMGMDGKVIVVLGTRGRLWVYRIQGRSRHQK* |
| Coding | >Agabi119p4|010120 ATGGACACTACTGGGGCTCAGCCTTGGTATCGGGACCCTTCCAGTGATCTTCCTTTTGAACTTTACTCTCAATTT AGACTAGAAGGTCTCCACCAGGATGCTCTCCGGACTGTGGCTTTCTTTCCTTGGGGCAATGAATCTTTGGGCTCT TTATGGGATGGTTCTCTCGCTACTGAACAGAATTACGCGAAATGGAACGTCGTGGTTAATAAATTTCGAGATACC GTTGCTATTGGTGGCGACACATCAGTTTACATCTTATGGTTGAAACGAAGGAAACACCCTCTGCGGATCAATATA CCAGAGACACCCGAAGTGGACTTGATACATTCAGATACCACCCAAGTCGCCTGGGTTCTGTCTCCTAATGCAATC GATCAGCCTTTACTGATATTGTCCAGAGCGAGCTTGATATGGATTTACAATCCTGTTAGCAAAGGTCTGTCGAGT TATCTACGAGGACATGGTGGTGCTATAACCTCTCTTGCGGTCCATCCTACCCGACCACACTTGTTTTGCAGTACT TCCAGAGATCATTCAGCGCGTATCTATGACTTGAATCTAGCCCCCCATCAAGGCGCTAAGGATTCTGACGTGAAC CCGCACTGGCCGCCAGGGACATTACCCAGCAGAGCTGGAGCACCACACGGTCTGCATATGAATGAAGCAGAAGGG TTCGGTATCGCAAGATGCATCATAGTCCTTATGGGTGGGAGGTCTGGTGGTCATGAAGCGGCCGTCCTCAGTGCT AGTTTCCATCCACAATATCCCATCATCGCAACTTGTGGAGTCGACCGTTGCATTAAACTTTGGCATGTTAACCCG CGCAACTCCTCCCAAATCACGAGGGAAGACAAGCCCTTGTTCAGCAGTAGTCGTATCCATCGTTCACGGGTTTTA TCTGTCCAATGGATGTCGCACGATACCCTTATATCGCATAATCCGTCAGCGATCCTTCGTACCGATCCAACTGAT GAAGACAATAAGGATACTTATATGGTGCCAGGAGAAATTGTTGTTTGGACCTGGCTAGGTTTAGACCGGTTTTTT CCTCCGCTCTATGATGATTTGAAGGCCGAAGGACGATCCCAGACTGTACTCCGTGGTTGCGCTTCCGATTATCAA GAGAGCTCTTCATTTACTATGTCTGCGAATGCTGCTTTTCCGGCTATCTATCCGCAACTGATCTCTCCAAATGTC AATGTCTACCAATCTCCGACTCATGATCCTATTGCCTTGTGCACCATTCCTACCGTGCTTCCTTTCGAAAAGAAA AAAGAAGAGCATCAAAAAGACAAGGGCGCTATATGTGTTTCTGATATCCATGGAGATCGATCTCTTTCGTCTTTG TCTGTTGAAAATCTCGCCACAGGAACCCCGAAGGATGGCGAAACGCGGGTGGCTGGAACAGTACAAATTTTCCAT ATTCCCAGCCTTCCACACCGCCTGCCTTCTAGATTTCCATTGGATGCACCTCCTGATGGCATGCCTGCCAATGCA AAAGTGGCAGAGGAGGGTATAGCAGACTTGCCTGGGCTTTCTAGATATCATGCTGAATTGATTGAGAGGGACCCT CCGCCGCCGTTCAAAAGCTGGACGCTTGAAGTCCCTTTGAGTGAATTTGACCTGACGTCTGAAGCTACTCATGCT GTGGGGCACGGTCCAGCAGGTGGAATGACGCAAGCCTATGATACCCGACAAAGGAAAGTGCGTTCTGAGAAGGAT GAGACGGAAAAAATAACGGGGCAAGAATACACTTTGAAGAGTATTGCTGAAGTGCCAGTGAGTGTACAGAATGCT AAGATGGGGATGGATGGGAAAGTTATTGTTGTGCTTGGGACGAGAGGAAGACTTTGGGTATACCGTATTCAAGGA CGGTCGAGGCATCAAAAATAG |
| Transcript | >Agabi119p4|010120 ATGGACACTACTGGGGCTCAGCCTTGGTATCGGGACCCTTCCAGTGATCTTCCTTTTGAACTTTACTCTCAATTT AGACTAGAAGGTCTCCACCAGGATGCTCTCCGGACTGTGGCTTTCTTTCCTTGGGGCAATGAATCTTTGGGCTCT TTATGGGATGGTTCTCTCGCTACTGAACAGAATTACGCGAAATGGAACGTCGTGGTTAATAAATTTCGAGATACC GTTGCTATTGGTGGCGACACATCAGTTTACATCTTATGGTTGAAACGAAGGAAACACCCTCTGCGGATCAATATA CCAGAGACACCCGAAGTGGACTTGATACATTCAGATACCACCCAAGTCGCCTGGGTTCTGTCTCCTAATGCAATC GATCAGCCTTTACTGATATTGTCCAGAGCGAGCTTGATATGGATTTACAATCCTGTTAGCAAAGGTCTGTCGAGT TATCTACGAGGACATGGTGGTGCTATAACCTCTCTTGCGGTCCATCCTACCCGACCACACTTGTTTTGCAGTACT TCCAGAGATCATTCAGCGCGTATCTATGACTTGAATCTAGCCCCCCATCAAGGCGCTAAGGATTCTGACGTGAAC CCGCACTGGCCGCCAGGGACATTACCCAGCAGAGCTGGAGCACCACACGGTCTGCATATGAATGAAGCAGAAGGG TTCGGTATCGCAAGATGCATCATAGTCCTTATGGGTGGGAGGTCTGGTGGTCATGAAGCGGCCGTCCTCAGTGCT AGTTTCCATCCACAATATCCCATCATCGCAACTTGTGGAGTCGACCGTTGCATTAAACTTTGGCATGTTAACCCG CGCAACTCCTCCCAAATCACGAGGGAAGACAAGCCCTTGTTCAGCAGTAGTCGTATCCATCGTTCACGGGTTTTA TCTGTCCAATGGATGTCGCACGATACCCTTATATCGCATAATCCGTCAGCGATCCTTCGTACCGATCCAACTGAT GAAGACAATAAGGATACTTATATGGTGCCAGGAGAAATTGTTGTTTGGACCTGGCTAGGTTTAGACCGGTTTTTT CCTCCGCTCTATGATGATTTGAAGGCCGAAGGACGATCCCAGACTGTACTCCGTGGTTGCGCTTCCGATTATCAA GAGAGCTCTTCATTTACTATGTCTGCGAATGCTGCTTTTCCGGCTATCTATCCGCAACTGATCTCTCCAAATGTC AATGTCTACCAATCTCCGACTCATGATCCTATTGCCTTGTGCACCATTCCTACCGTGCTTCCTTTCGAAAAGAAA AAAGAAGAGCATCAAAAAGACAAGGGCGCTATATGTGTTTCTGATATCCATGGAGATCGATCTCTTTCGTCTTTG TCTGTTGAAAATCTCGCCACAGGAACCCCGAAGGATGGCGAAACGCGGGTGGCTGGAACAGTACAAATTTTCCAT ATTCCCAGCCTTCCACACCGCCTGCCTTCTAGATTTCCATTGGATGCACCTCCTGATGGCATGCCTGCCAATGCA AAAGTGGCAGAGGAGGGTATAGCAGACTTGCCTGGGCTTTCTAGATATCATGCTGAATTGATTGAGAGGGACCCT CCGCCGCCGTTCAAAAGCTGGACGCTTGAAGTCCCTTTGAGTGAATTTGACCTGACGTCTGAAGCTACTCATGCT GTGGGGCACGGTCCAGCAGGTGGAATGACGCAAGCCTATGATACCCGACAAAGGAAAGTGCGTTCTGAGAAGGAT GAGACGGAAAAAATAACGGGGCAAGAATACACTTTGAAGAGTATTGCTGAAGTGCCAGTGAGTGTACAGAATGCT AAGATGGGGATGGATGGGAAAGTTATTGTTGTGCTTGGGACGAGAGGAAGACTTTGGGTATACCGTATTCAAGGA CGGTCGAGGCATCAAAAATAG |
| Gene | >Agabi119p4|010120 ATGGACACTACTGGGGCTCAGCCTTGGTATCGGGACCCTTCCAGTGATCTTCCTTTTGAACTTTACTCTCAATTT AGAGTAAGTGCTAGACATCGTCTGATCATCCTTACTGCGATTTCCTAGTATTGACCCCAGTGGGTAGCTAGAAGG TCTCCACCAGGATGCTCTCCGGACTGTGGCTTTCTTTCCTTGGGGCAATGAATCTTTGGGCTCTTTATGGGATGG TTCTCTCGCTACTGAACAGAATTACGCGAAATGGAACGTCGTGGTTAATAAATTTCGAGATACCGTTGCTATTGG TGGCGACACATCAGTTTACATCTTATGGTTGAAACGAAGGAAACACCCTCTGCGGATCAATATACCAGAGGTATG TCCACTAAAAATACCCCTTGGTGCATCTGGATTGCTGAGGATGTTTCTATCTCGAAGACACCCGAAGTGGACTTG ATACATTCAGATACCACCCAAGTCGCCTGGGTTCTGTCTCCTAATGCAATCGATCAGCCTTTACTGATATTGTCC AGAGCGAGCTTGATATGGATTTACAATCCTGTTAGCAAAGGTCTGTCGAGTTATCTACGAGGACATGGTGGTGTA CGGTTCTCTTCCGACTTTTGTGACGCTCCATTCTGACAACCGCGCCAGGCTATAACCTCTCTTGCGGTCCATCCT ACCCGACCACACTTGTTTTGCAGTACTTCCAGAGATCATTCAGCGCGTATCTATGACTTGAATCTAGCCCCCCAT CAAGGCGCTAAGGATTCTGACGTGAACCCGCACTGGCCGCCAGGGACATTACCCAGCAGAGCTGGAGCACCACAC GGTCTGCATATGAATGAAGCAGAAGGGTTCGGTATCGCAAGATGCATCATAGTCCTTATGGGTGGGAGGTCTGGT GGTCATGAAGCGGCCGTCCTCAGTGCTGTACGTATATTAAGATTTTGTTTGTGTTATGCCAACCTAATTTGATGG TATATCATAGAGTTTCCATCCACAATATCCCATCATCGCAACTTGTGGAGTAAATTCATATCATGCGATTTGTTG TTGCCGAGCTCATTACAACCCAGGTCGACCGTTGCATTAAACTTTGGCATGTTAACCCGCGCAACTCCTCCCAAA TCACGAGGGAAGACAAGCCCTTGTTCAGCAGTAGTCGTATCCATCGTTCACGGGTTTTATCTGTCCAATGGATGT CGCACGATACCCTTATATCGCATAATCCGTCAGCGATCCTTCGTACCGATCCAACTGATGAAGACAATAAGGATA CTTATATGGTGCCAGGAGAAATTGTTGTTTGGACCTGGCTAGGTTTAGACCGGTTTTTTCCTCCGCTCTATGATG ATTTGAAGGCCGAAGGACGATCCCAGACTGTACTCCGTGGTTGCGCTTCCGTATGTGATCTTCAATTCCAAACGC ATCATGTAATGCTCACAGTTTATTGTTCCATAGGATTATCAAGAGAGCTGTAAGTTCCCGTCTGTATTCATCTGC CTATCTCTTATCTATTATCCAAGCTTCATTTACTATGTCTGCGAATGCTGCTTTTCCGGCTATCTATCCGCAACT GATCTCTCCAAATGTCAATGTCTACCAATCTCCGACTCATGATCCTATTGCCTTGTGCACCATTCCTACCGTGCT TCCTTTCGAAAAGAAAAAAGAAGAGCATCAAAAAGACAAGGGCGCTATATGTGTTTCTGATATCCATGGAGATCG ATCTCTTTCGTCTTTGTCTGTTGAAAATCTCGCCACAGGAACCCCGAAGGATGGCGAAACGCGGGTGGCTGGAAC AGTACAAATTTTCCATATTCCCAGCCTTCCACACCGCCTGCCTTCTAGATTTCCATTGGATGCACCTCCTGATGG CATGCCTGCCAATGCAAAAGTGGCAGAGGAGGGTATAGCAGACTTGCCTGGGCTTTCTAGATATCATGCTGAATT GATTGAGAGGGACCCTCCGCCGCCGTTCAAAAGCTGGACGCTTGAAGTCCCTTTGAGTGAATTTGACCTGACGTC TGAAGCTACTCATGCTGTGGGGCACGGTCCAGCAGGTGGAATGACGCAAGCCTATGATACCCGACAAAGGAAAGT GCGTTCTGAGAAGGATGAGACGGAAAAAATAACGGGGCAAGAATACACTTTGAAGAGTATTGCTGAAGTGCCAGT GAGTGTACAGAATGCTAAGATGGGGATGGATGGGAAAGTTATTGTTGTGCTTGGGACGAGAGGAAGACTTTGGGT ATACCGTATTCAAGGACGGTCGAGGCATCAAAAATAG |