Fungal Genomics

General Properties

Protein ID	Agabi119p4|009010
Gene name
Location	scaffold_01a:2106856..2107327
Strand	+
Gene length (bp)	471
Transcript length (bp)	420
Coding sequence length (bp)	420
Protein length (aa)	140

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05047	L51_S25_CI-B8	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain	1.1E-08	42	90

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q9UUC8|RM51_SCHPO	54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl51 PE=3 SV=1	11	130	2.0E-20
sp|Q06090|RM51_YEAST	54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL51 PE=1 SV=1	15	134	3.0E-15
sp|Q758S3|RM51_ASHGO	54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRPL51 PE=3 SV=1	15	135	2.0E-14
sp|Q95KE5|RM43_BOVIN	39S ribosomal protein L43, mitochondrial OS=Bos taurus GN=MRPL43 PE=2 SV=2	15	129	3.0E-07
sp|Q99N89|RM43_MOUSE	39S ribosomal protein L43, mitochondrial OS=Mus musculus GN=Mrpl43 PE=1 SV=1	15	130	1.0E-06

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID	5
Orthogroup	1594
Change Orthofinder run	5: Agaricus - all strains

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39|009010
Agaricus bisporus var bisporus H97	AgabiH97|009010
Agaricus bisporus var burnettii H119p4	Agabi119p4|009010 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4|009010 MQPLLRAALRSRPANGHTTFLPQIRKLVFEYCDKWPSSHNTRTFLCTRLQDLARENPHLELVVKQRNHKEPIVRG FYVNNRDKVVPLNSLEVTAIQQKIRLLLDASGAKIKPLKRRPVESTTESPRGIWSGLHADRPIL*
Coding	>Agabi119p4|009010 ATGCAGCCCCTCCTCCGCGCCGCCCTCCGCTCAAGGCCCGCCAACGGCCACACCACTTTCCTACCCCAGATCAGG AAACTCGTCTTTGAGTATTGCGACAAGTGGCCCTCCTCCCACAACACCCGCACCTTTCTCTGCACCCGCCTCCAG GACCTTGCCCGCGAAAATCCCCATCTCGAGCTCGTCGTCAAACAGCGCAATCACAAGGAGCCCATCGTCCGCGGC TTCTATGTCAACAACCGCGATAAAGTCGTCCCCCTCAACAGTCTAGAAGTCACTGCAATCCAACAAAAAATTCGC CTCTTACTCGACGCGTCGGGCGCAAAAATTAAACCCCTCAAGCGCAGACCCGTAGAGAGCACTACAGAATCCCCC AGAGGCATATGGAGTGGTCTCCACGCCGACCGGCCTATTCTATGA
Transcript	>Agabi119p4|009010 ATGCAGCCCCTCCTCCGCGCCGCCCTCCGCTCAAGGCCCGCCAACGGCCACACCACTTTCCTACCCCAGATCAGG AAACTCGTCTTTGAGTATTGCGACAAGTGGCCCTCCTCCCACAACACCCGCACCTTTCTCTGCACCCGCCTCCAG GACCTTGCCCGCGAAAATCCCCATCTCGAGCTCGTCGTCAAACAGCGCAATCACAAGGAGCCCATCGTCCGCGGC TTCTATGTCAACAACCGCGATAAAGTCGTCCCCCTCAACAGTCTAGAAGTCACTGCAATCCAACAAAAAATTCGC CTCTTACTCGACGCGTCGGGCGCAAAAATTAAACCCCTCAAGCGCAGACCCGTAGAGAGCACTACAGAATCCCCC AGAGGCATATGGAGTGGTCTCCACGCCGACCGGCCTATTCTATGA
Gene	>Agabi119p4|009010 ATGCAGCCCCTCCTCCGCGCCGCCCTCCGCTCAAGGCCCGCCAACGGCCACACCACTTTCCTACCCCAGATCAGG AAACTCGTCTTTGAGTATTGCGACAAGTGGCCCTCCTCCCACAACACCCGCACCTTTCTCTGCACCCGCCTCCAG GACCTTGCCCGCGAAAATCCCCATCTCGAGCTCGTCGTCAAACAGCGCAATCACAAGGAGCCCATCGTCCGCGGC TTCTATGGCGCGTACTTTTCATTTGTTGCACATATCATCACGCTCATCCCCGCCTCAGTCAACAACCGCGATAAA GTCGTCCCCCTCAACAGTCTAGAAGTCACTGCAATCCAACAAAAAATTCGCCTCTTACTCGACGCGTCGGGCGCA AAAATTAAACCCCTCAAGCGCAGACCCGTAGAGAGCACTACAGAATCCCCCAGAGGCATATGGAGTGGTCTCCAC GCCGACCGGCCTATTCTATGA