© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|008160 |
| Gene name | |
| Location | scaffold_01a:1911777..1912654 |
| Strand | + |
| Gene length (bp) | 877 |
| Transcript length (bp) | 609 |
| Coding sequence length (bp) | 609 |
| Protein length (aa) | 203 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09430 | EMC7_beta-sandw | ER membrane protein complex subunit 7, beta-sandwich domain | 5.7E-20 | 40 | 144 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94694|YG1A_SCHPO | UPF0620 protein C83.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC83.10 PE=3 SV=1 | 1 | 177 | 7.0E-13 |
| sp|Q9NPA0|EMC7_HUMAN | ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1 | 19 | 155 | 3.0E-10 |
| sp|Q4R5V2|EMC7_MACFA | ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1 | 19 | 155 | 3.0E-10 |
| sp|A5PJA8|EMC7_BOVIN | ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1 | 19 | 155 | 3.0E-10 |
| sp|Q9EP72|EMC7_MOUSE | ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1 | 19 | 155 | 3.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94694|YG1A_SCHPO | UPF0620 protein C83.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC83.10 PE=3 SV=1 | 1 | 177 | 7.0E-13 |
| sp|Q9NPA0|EMC7_HUMAN | ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1 | 19 | 155 | 3.0E-10 |
| sp|Q4R5V2|EMC7_MACFA | ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1 | 19 | 155 | 3.0E-10 |
| sp|A5PJA8|EMC7_BOVIN | ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1 | 19 | 155 | 3.0E-10 |
| sp|Q9EP72|EMC7_MOUSE | ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1 | 19 | 155 | 3.0E-10 |
| sp|Q0IHY5|EMC7_XENTR | ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1 | 16 | 178 | 1.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 137 | 159 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|008160 MLGLQALLFSSWLLVATAFDLTGMVVWNDVCPDAVSLGRGKVVLNNGQLGGSVTANGSFTIYNVPTGSHLLSVVA HDHSFDNLRVDVNNETAHVHPYTLGTPFNPPSTVSLSYPLKLTPKEKLDFFVPPHSFSLSGLLTNPMVLFGIGGL ALFAINSLVDVNALQEAAKQGSESNTSPPRLADGHDQIRGGPMKRGTKRTRR* |
| Coding | >Agabi119p4|008160 ATGCTGGGTCTACAGGCGCTGTTATTTTCCTCATGGCTTCTCGTTGCCACTGCGTTTGATCTCACTGGCATGGTC GTATGGAACGACGTTTGTCCAGATGCTGTTTCTCTAGGAAGGGGGAAGGTAGTCCTCAACAATGGACAATTAGGT GGTAGTGTTACTGCAAATGGCAGCTTCACCATTTATAATGTGCCGACAGGTTCTCATCTACTGTCAGTGGTTGCT CATGACCATTCTTTTGATAACTTGCGAGTCGACGTCAATAATGAGACTGCCCATGTACACCCATATACTCTCGGA ACGCCTTTCAATCCACCCTCAACCGTCTCTTTGTCATACCCACTCAAACTGACGCCAAAAGAAAAGCTCGACTTC TTTGTGCCGCCGCATTCCTTCAGCCTTTCCGGTCTGTTGACAAATCCTATGGTCCTGTTCGGTATCGGTGGCCTT GCATTATTCGCTATAAACTCGCTTGTGGACGTTAATGCGCTTCAGGAGGCTGCGAAGCAGGGAAGCGAAAGCAAC ACTTCTCCACCCAGACTCGCAGATGGTCATGATCAGATTCGGGGTGGACCAATGAAACGAGGGACTAAAAGAACA CGGCGGTAA |
| Transcript | >Agabi119p4|008160 ATGCTGGGTCTACAGGCGCTGTTATTTTCCTCATGGCTTCTCGTTGCCACTGCGTTTGATCTCACTGGCATGGTC GTATGGAACGACGTTTGTCCAGATGCTGTTTCTCTAGGAAGGGGGAAGGTAGTCCTCAACAATGGACAATTAGGT GGTAGTGTTACTGCAAATGGCAGCTTCACCATTTATAATGTGCCGACAGGTTCTCATCTACTGTCAGTGGTTGCT CATGACCATTCTTTTGATAACTTGCGAGTCGACGTCAATAATGAGACTGCCCATGTACACCCATATACTCTCGGA ACGCCTTTCAATCCACCCTCAACCGTCTCTTTGTCATACCCACTCAAACTGACGCCAAAAGAAAAGCTCGACTTC TTTGTGCCGCCGCATTCCTTCAGCCTTTCCGGTCTGTTGACAAATCCTATGGTCCTGTTCGGTATCGGTGGCCTT GCATTATTCGCTATAAACTCGCTTGTGGACGTTAATGCGCTTCAGGAGGCTGCGAAGCAGGGAAGCGAAAGCAAC ACTTCTCCACCCAGACTCGCAGATGGTCATGATCAGATTCGGGGTGGACCAATGAAACGAGGGACTAAAAGAACA CGGCGGTAA |
| Gene | >Agabi119p4|008160 ATGCTGGGTCTACAGGCGCTGTTATTTTCCTCATGGTATGTTAAATATCTAGCTACATGTATCTGCGGTTAACAT GATTCAGGCTTCTCGTTGCCACTGCGTTTGATCTCACTGGCATGGTCGTATGGAACGACGTTTGTCCAGGTTTGC CTACTCCCCGTCTCTTCACCTGTTCTCTCAGTAATCTAACCACTTGAATGCTGTCGTACAGATGCTGTTTCTCTA GGAAGGGGGAAGGTAGTCCTCAACAATGGACAATTAGGTGGTAGTGTTACTGCAAATGGCAGCTTCACCATGTAT TTTCCATCTCTCCAGCGATTCCTATCCTTTCCTGACTGAATTCGCAGTTATAATGTGCCGACAGGTTCTCATCTA CTGTCAGTGGTTGCTCATGACCATTCTTTTGATAACGTGCGCGCACTATCCGCATTTTACGATGTGTTCTATTGA CATATACGAATAGTTGCGAGTCGACGTCAATAATGAGACTGCCCATGTACACCCATATACTCTCGGAACGCCTTT CAATCCACCCTCAACCGTCTCTTTGTCATACCCACTCAAACTGACGCCAAAAGAAAAGCTCGACTTCTTTGTGCC GCCGCATTCCTTCAGCCTTTCCGGTCTGTTGACAAATCCTATGGTCCTGTTCGGTATCGGTGGCCTTGCATTATT CGCTATAAACTCGCTTGTGGACGTTAATGCGCTTCAGGAGGCTGCGAAGCAGGGAAGCGAAAGGTGATTGAAATG CAGTGTCTTCCATTATCAGAACTGACACTTCGATTATAGCAACACTTCTCCACCCAGACTCGCAGATGGTCATGA TCAGATTCGGGGTGGACCAATGAAACGAGGGACTAAAAGAACACGGCGGTAA |