Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|008150
Gene name
Locationscaffold_01a:1910670..1911672
Strand-
Gene length (bp)1002
Transcript length (bp)768
Coding sequence length (bp)768
Protein length (aa) 256

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04900 Fcf1 Fcf1 2.2E-32 52 148

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 1 205 8.0E-57
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 1 207 7.0E-46
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 1 206 3.0E-29
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 1 194 1.0E-27
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 1 198 1.0E-26
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Swissprot ID Swissprot Description Start End E-value
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 1 205 8.0E-57
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 1 207 7.0E-46
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 1 206 3.0E-29
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 1 194 1.0E-27
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 1 198 1.0E-26
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 25 152 3.0E-12
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 25 140 2.0E-11
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 25 140 2.0E-11
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 25 140 2.0E-11
sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1 25 139 3.0E-11
sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2 25 140 1.0E-10
sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 25 153 2.0E-09
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GO

GO Term Description Terminal node
GO:0032040 small-subunit processome Yes
GO:0032991 protein-containing complex No
GO:1990904 ribonucleoprotein complex No
GO:0030684 preribosome No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|008150
MRQKRAKTYRKLMHLYCRSFGFRQPYQVLVDSETCKAAISHKIDIVKQLGTVLQGEVKPMITQCCIHELYLQGKS
QQSATDLAKTFERRKCNHKEPIPGDECLLSVVGESNKHRYVIFTQSHPLRIKLRSIPAAPIIHINRSVVVLEPPS
DVTLQTKSRAEEQSLHATDKSSAPISIPEPPKNKKGPKGPNPLSVKKKAIANPSTHITRQTNEMPATRGMKRKRE
VADDERDSDDEIMANKKRKRKRKHKSSQHA*
Coding >Agabi119p4|008150
ATGCGCCAAAAGCGGGCAAAAACATATCGCAAATTAATGCACCTCTATTGTCGATCTTTCGGCTTCCGACAACCA
TATCAGGTCCTTGTTGATTCAGAAACTTGTAAAGCTGCAATTTCTCACAAAATCGACATTGTCAAACAGCTAGGG
ACTGTTCTACAGGGCGAAGTCAAACCCATGATCACCCAATGCTGTATTCATGAGCTCTATCTGCAAGGCAAATCC
CAACAATCTGCAACCGACCTTGCCAAAACCTTTGAGCGGCGCAAATGCAACCATAAAGAACCTATACCCGGAGAT
GAATGTCTGTTAAGCGTTGTTGGTGAATCAAACAAACACCGATATGTGATTTTCACACAATCTCATCCTCTCCGA
ATCAAACTTCGCAGCATACCGGCAGCGCCAATAATTCATATCAATCGTTCAGTCGTAGTCCTTGAGCCCCCAAGT
GACGTTACGCTACAAACAAAGAGCCGGGCGGAAGAACAATCCCTGCATGCTACGGACAAGAGCAGTGCCCCAATT
TCGATACCTGAACCTCCGAAGAACAAGAAAGGTCCCAAGGGTCCAAACCCGCTTAGCGTGAAGAAAAAGGCAATT
GCCAACCCTTCGACTCACATTACAAGACAAACGAACGAGATGCCCGCCACACGGGGTATGAAACGGAAAAGAGAG
GTTGCTGATGATGAACGAGATAGTGATGATGAAATAATGGCAAACAAAAAGCGAAAGCGAAAAAGAAAGCACAAA
TCATCACAACATGCTTAG
Transcript >Agabi119p4|008150
ATGCGCCAAAAGCGGGCAAAAACATATCGCAAATTAATGCACCTCTATTGTCGATCTTTCGGCTTCCGACAACCA
TATCAGGTCCTTGTTGATTCAGAAACTTGTAAAGCTGCAATTTCTCACAAAATCGACATTGTCAAACAGCTAGGG
ACTGTTCTACAGGGCGAAGTCAAACCCATGATCACCCAATGCTGTATTCATGAGCTCTATCTGCAAGGCAAATCC
CAACAATCTGCAACCGACCTTGCCAAAACCTTTGAGCGGCGCAAATGCAACCATAAAGAACCTATACCCGGAGAT
GAATGTCTGTTAAGCGTTGTTGGTGAATCAAACAAACACCGATATGTGATTTTCACACAATCTCATCCTCTCCGA
ATCAAACTTCGCAGCATACCGGCAGCGCCAATAATTCATATCAATCGTTCAGTCGTAGTCCTTGAGCCCCCAAGT
GACGTTACGCTACAAACAAAGAGCCGGGCGGAAGAACAATCCCTGCATGCTACGGACAAGAGCAGTGCCCCAATT
TCGATACCTGAACCTCCGAAGAACAAGAAAGGTCCCAAGGGTCCAAACCCGCTTAGCGTGAAGAAAAAGGCAATT
GCCAACCCTTCGACTCACATTACAAGACAAACGAACGAGATGCCCGCCACACGGGGTATGAAACGGAAAAGAGAG
GTTGCTGATGATGAACGAGATAGTGATGATGAAATAATGGCAAACAAAAAGCGAAAGCGAAAAAGAAAGCACAAA
TCATCACAACATGCTTAG
Gene >Agabi119p4|008150
ATGCGCCAAAAGCGGGCAAAAACATATCGCAAATTAATGCACCTCTATTGTCGATCTTTCGGCTTCCGACAACCA
TATCAGGTCCTTGGTAAATTTTCTACCGTCTCCCAAGTCGTGCCTCCAATCTCAGTATCCGGCTAGTTGATTCAG
AAACTTGTAAAGCTGCAATTTCTCACAAAATCGACATTGTCAAACAGCTAGGGACTGTTCTACAGGGCGAAGTCA
AACCCAGTATGTCTTAATGTCATTCATAACAACTTATAGGTTGTTAAGCCCGCACGGCAAAGCGGTTCTTTAGTG
ATCACCCAATGCTGTATTCATGAGCTCTATCTGCAAGGCAAATCCCAACAATCTGCAACCGACCTTGCCAAAACC
TTTGAGCGGCGCAAATGCAACCATAAAGAACCTATACCCGGAGATGAATGTCTGTTAAGCGTTGTTGGTATGCCA
TTTCTTTTCTGACAGGTTTTCTATCGAAGTTGCTGAACGAACATCAACTTCTAGGTGAATCAAACAAACACCGAT
ATGTGATTTTCACACAATCTCATCCTCTCCGAATCAAACTTCGCAGCATACCGGCAGCGCCAATAATTCATATCA
ATCGTTCAGTCGTAGTCCTTGAGCCCCCAAGTGACGTTACGCTACAAACAAAGAGCCGGGTAAGAGGCTGAGTGT
CTCTAACTTGTGGTGCTTTCTAAATTGATCCTGCAGGCGGAAGAACAATCCCTGCATGCTACGGACAAGAGCAGT
GCCCCAATTTCGATACCTGAACCTCCGAAGAACAAGAAAGGTCCCAAGGGTCCAAACCCGCTTAGCGTGAAGAAA
AAGGCAATTGCCAACCCTTCGACTCACATTACAAGACAAACGAACGAGATGCCCGCCACACGGGGTATGAAACGG
AAAAGAGAGGTTGCTGATGATGAACGAGATAGTGATGATGAAATAATGGCAAACAAAAAGCGAAAGCGAAAAAGA
AAGCACAAATCATCACAACATGCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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