© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|008030 |
| Gene name | |
| Location | scaffold_01a:1882579..1883179 |
| Strand | + |
| Gene length (bp) | 600 |
| Transcript length (bp) | 336 |
| Coding sequence length (bp) | 336 |
| Protein length (aa) | 112 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01423 | LSM | LSM domain | 5.7E-17 | 39 | 106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14036|SMD2_SCHPO | Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1 | 1 | 108 | 3.0E-50 |
| sp|Q9VI10|SMD2_DROME | Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=1 SV=1 | 8 | 109 | 6.0E-39 |
| sp|Q54NC5|SMD2_DICDI | Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1 | 21 | 109 | 2.0E-37 |
| sp|Q18786|SMD2_CAEEL | Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1 | 8 | 109 | 3.0E-37 |
| sp|P62317|SMD2_MOUSE | Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1 | 8 | 109 | 7.0E-37 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14036|SMD2_SCHPO | Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1 | 1 | 108 | 3.0E-50 |
| sp|Q9VI10|SMD2_DROME | Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=1 SV=1 | 8 | 109 | 6.0E-39 |
| sp|Q54NC5|SMD2_DICDI | Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1 | 21 | 109 | 2.0E-37 |
| sp|Q18786|SMD2_CAEEL | Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1 | 8 | 109 | 3.0E-37 |
| sp|P62317|SMD2_MOUSE | Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1 | 8 | 109 | 7.0E-37 |
| sp|P62316|SMD2_HUMAN | Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1 | 8 | 109 | 7.0E-37 |
| sp|Q3SZF8|SMD2_BOVIN | Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1 | 8 | 109 | 7.0E-37 |
| sp|Q06217|SMD2_YEAST | Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2 | 2 | 109 | 3.0E-33 |
| sp|Q9LMN4|LSM3A_ARATH | Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1 | 20 | 106 | 4.0E-07 |
| sp|Q9C6K5|LSM3B_ARATH | Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1 | 21 | 111 | 5.0E-07 |
| sp|Q9Y7M4|LSM3_SCHPO | Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm3 PE=1 SV=2 | 43 | 106 | 2.0E-06 |
| sp|P62311|LSM3_MOUSE | U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2 | 42 | 106 | 2.0E-06 |
| sp|P62310|LSM3_HUMAN | U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2 | 42 | 106 | 2.0E-06 |
| sp|Q32PE9|LSM3_BOVIN | U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3 | 42 | 106 | 2.0E-06 |
| sp|Q54HH8|SMDL_DICDI | Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium discoideum GN=DDB_G0289453 PE=3 SV=1 | 23 | 107 | 4.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|008030 MSQYVHVPKSELDEAQLRQLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMW TEIPKGKNKKPVNKDRFISKMFLRGDSVILVLRNQA* |
| Coding | >Agabi119p4|008030 ATGAGCCAGTACGTGCACGTTCCCAAATCTGAACTTGACGAGGCCCAGCTCCGCCAGTTGGAGGAGCACGAGATA TCGCAAGGACCTTTGTCTGTTCTTCAGCAAGCCGTTCGCAATCATACTCAAGTCCTCATCTCTTTACGAAATAAC AAAAAATTATTGGCCCGGGTGAAGGCTTTTGATCGCCACAGCAACATGGTGCTGGAAAACGTGAAAGAGATGTGG ACAGAAATTCCCAAAGGCAAGAATAAGAAACCTGTCAACAAGGATCGATTCATCAGCAAGATGTTCCTGCGTGGC GACTCGGTCATCCTTGTTCTTCGCAATCAAGCATAG |
| Transcript | >Agabi119p4|008030 ATGAGCCAGTACGTGCACGTTCCCAAATCTGAACTTGACGAGGCCCAGCTCCGCCAGTTGGAGGAGCACGAGATA TCGCAAGGACCTTTGTCTGTTCTTCAGCAAGCCGTTCGCAATCATACTCAAGTCCTCATCTCTTTACGAAATAAC AAAAAATTATTGGCCCGGGTGAAGGCTTTTGATCGCCACAGCAACATGGTGCTGGAAAACGTGAAAGAGATGTGG ACAGAAATTCCCAAAGGCAAGAATAAGAAACCTGTCAACAAGGATCGATTCATCAGCAAGATGTTCCTGCGTGGC GACTCGGTCATCCTTGTTCTTCGCAATCAAGCATAG |
| Gene | >Agabi119p4|008030 ATGAGGTATGTGCTTCAGCCTGTTTATAACCAACAGAGTTGACTCTTTTCGCAGCCAGTACGTGCACGTTCCCAA ATCTGAACTTGACGAGGCCCAGCTCCGCCAGTTGGAGGAGCACGAGATATCGCAAGGACCTTTGTCTGTTCTTCA GCAAGCCGTTCGCAATCATACTCAAGTCCTCATCTCTTTACGAAATAACAAAAAATTATTGGCCCGGGTGAAGGC TTTTGATCGCCACAGCAACATGGTACGTATCGTCTTTGTGAACACGCTTTGTACCTTACTATTGTGGCTGTCAAA TAGGTGCTGGAAAACGTGAAAGAGGTGCGTCTGCCTGTCCTTATTCGTTAGCAAAATACTCAACGCATTGCAAAT AGATGTGGACAGAAATTCCCAAAGGCAAGAATAAGAAACCTGTCAACAAGGATCGATTCATCAGCAAGATGTTCC TGCGGTACGTGCGCGCCTGTTATCTGCTTGTTGGCCTGGATCGCTCACTTGATATCTTGTAGTGGCGACTCGGTC ATCCTTGGTCAGTACTTGGTAATTTTCTTCAAAGCTATCGGCTGACTTTCTGCAGTTCTTCGCAATCAAGCATAG |