Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|007880
Gene name
Locationscaffold_01a:1850325..1853310
Strand+
Gene length (bp)2985
Transcript length (bp)2724
Coding sequence length (bp)2724
Protein length (aa) 908

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01388 ARID ARID/BRIGHT DNA binding domain 1.2E-15 146 266

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O74365|SOL1_SCHPO SWI/SNF chromatin-remodeling complex subunit sol1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sol1 PE=1 SV=1 137 611 4.0E-11

GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
ARID/BRIGHT

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|007880
MLPQNVQQLRSQAQHQPQQSNMNPTGMSAGTMDHPSFFNNLDPSQAKQMAALTAANNARMATNSRPPSSMPVGNG
ASSGPYLGGITPAGYSSTKNDLLPAANGHANFQLPNNHGVSQTPNSAVNASFLDPPMSQPSAQAASFKQRQHQFL
NGLANVMARRNTPLPPSLTGIPSPNYDPNTSPWSYIEPSNEVGSFRLAGQDVSLFKLWGLVMQHGGAQALKHNNG
WFTIASEFNLPEEFPQVQANGSASVVLMLEQMYTGILFPFEDIYKKNLQEQQRKAQLASRQIPMGQPGQIRTMPA
NGPQQGPNQMQRGPVGTMAHTPQAPHQRAGLNAQVPQHNISLSQSTSQAGMASGSEPNLLDSDIQGIKRKLDIED
PEGKRARQKTDPLEASTGGDGSAFFNQTPGLKRTRQPLRRKIEYVPWARELDTHGGRNLRLIEHEWNTISQRRPL
RDINDWGVVDIEGLRMSIRSKLPTELSYALTTVTILSTMRSQNPGSGFPIFQCPDLFDDMLDLLEEEAFGEIQDD
ISEDAMEVSPIVTQRDLLNAIYDEGLKPFAALEAHQGSKKLTSGFTPRPADTVLAIVNILRNLSVVSDNWQFLSH
HDKMLDLLLRLCMVRRVDGSLIPVSPNLSLSDLVTIRKDTLYTLVNLVGLINFGPAYSLSQPMTRVSKRVFELVA
SYLVDPSEAVSPFSSIQVAGQPLNAHPKPSALTDASLEVFTRFSLSDANRQALAQTIPKPYIWELFEALVHRLPI
NDVDFQLFGRETWLSYLEKMVMSLYSLSFLAPPSLKQRLKSDRKLGFKTVMFRLVQKLLTNPNPDFRMLFFLCSR
RAIEAMKVLDDEGDLFDTTETTTATLSFGMGFADSSESVMESGSGMLVGQRDATWDIMMTREVWSDETMFKELES
LARVECH*
Coding >Agabi119p4|007880
ATGCTCCCACAGAATGTGCAACAGCTGCGCTCTCAAGCTCAGCATCAGCCTCAGCAATCCAACATGAATCCCACT
GGCATGTCGGCAGGAACAATGGATCATCCGTCTTTCTTCAACAACCTCGATCCTTCCCAAGCGAAGCAAATGGCC
GCTCTTACCGCCGCTAACAACGCTCGAATGGCTACGAACAGCCGCCCACCGTCTTCCATGCCTGTGGGTAACGGA
GCAAGTTCGGGGCCATATCTCGGGGGAATTACACCCGCAGGTTACTCAAGTACAAAAAACGATCTTTTACCTGCT
GCGAATGGACATGCGAATTTTCAATTACCGAATAATCATGGCGTTTCACAAACGCCAAACTCGGCTGTCAACGCA
TCTTTCCTCGATCCTCCCATGTCACAGCCTTCCGCCCAAGCTGCATCCTTCAAACAGCGCCAGCACCAGTTCCTC
AATGGCCTCGCCAATGTCATGGCGAGGCGGAACACTCCTCTTCCCCCATCATTAACTGGCATCCCCTCCCCCAAT
TATGACCCGAACACCTCACCATGGTCTTACATCGAACCTTCGAATGAGGTGGGGTCTTTTCGTCTTGCAGGGCAG
GATGTCAGTCTTTTCAAACTCTGGGGTCTTGTCATGCAGCATGGAGGTGCCCAAGCGCTCAAGCACAACAATGGA
TGGTTTACTATAGCTAGCGAATTTAACCTACCGGAAGAGTTCCCTCAAGTGCAAGCTAATGGTTCGGCGTCTGTT
GTACTTATGTTGGAGCAGATGTACACTGGCATTCTATTTCCGTTTGAGGATATCTACAAGAAAAATTTACAGGAG
CAGCAGCGAAAAGCTCAGTTGGCGTCAAGACAAATTCCCATGGGACAGCCAGGGCAGATACGTACAATGCCAGCA
AATGGACCGCAACAAGGTCCCAACCAAATGCAGCGCGGTCCCGTTGGCACGATGGCTCACACTCCCCAAGCACCC
CATCAAAGAGCGGGTCTCAATGCTCAAGTCCCGCAGCACAATATCTCACTATCCCAGTCGACTTCGCAAGCTGGA
ATGGCTTCTGGATCCGAACCTAATCTTCTGGATAGTGATATTCAAGGCATCAAACGAAAGCTCGATATAGAAGAT
CCAGAAGGCAAACGTGCTAGGCAGAAAACAGACCCTTTAGAAGCTTCAACCGGTGGAGATGGATCCGCTTTTTTC
AATCAAACTCCGGGACTAAAGAGAACGCGCCAACCTCTGCGGCGCAAGATAGAATATGTACCCTGGGCACGCGAA
CTGGATACACATGGTGGCCGAAATCTACGACTGATAGAGCATGAATGGAACACCATCTCCCAGCGACGGCCCCTC
CGCGACATCAATGACTGGGGCGTCGTTGATATTGAAGGTCTTCGGATGTCTATTCGTTCGAAACTTCCAACCGAA
CTGTCATATGCTTTGACAACCGTCACTATCCTTTCCACAATGCGCAGTCAAAACCCGGGCTCTGGTTTTCCTATC
TTTCAATGTCCCGACCTCTTTGATGATATGCTTGACCTCTTGGAAGAGGAAGCGTTTGGAGAAATACAAGATGAT
ATTTCAGAGGATGCAATGGAGGTGTCTCCCATCGTTACGCAGCGCGATCTTCTCAACGCCATTTACGATGAAGGA
CTTAAACCCTTTGCTGCCCTAGAGGCTCACCAAGGGAGCAAGAAATTGACTTCGGGTTTTACTCCACGGCCAGCG
GATACTGTTCTTGCTATTGTCAATATTTTGCGGAATCTGTCAGTTGTTTCTGACAACTGGCAATTCTTATCGCAC
CATGATAAGATGCTCGATCTTCTGCTGCGGCTTTGTATGGTCCGTCGAGTAGACGGTTCACTTATCCCAGTATCG
CCAAACCTGTCCTTGTCAGATTTGGTTACAATTCGGAAAGATACCCTTTACACTCTCGTCAACCTTGTAGGTTTA
ATCAACTTCGGGCCTGCGTATTCACTGTCACAGCCGATGACTCGGGTTTCGAAACGTGTATTCGAGCTCGTGGCG
TCATATCTTGTCGACCCCTCCGAGGCTGTGTCTCCATTTTCATCGATCCAAGTCGCAGGACAACCATTAAATGCG
CATCCGAAGCCGTCAGCACTCACTGATGCTTCTCTAGAAGTTTTCACTCGCTTCAGCCTCTCAGATGCGAATCGA
CAAGCATTAGCCCAGACGATACCAAAACCATACATATGGGAGCTGTTCGAAGCGCTAGTCCACCGACTACCCATT
AACGACGTAGATTTCCAGCTGTTCGGGCGCGAAACGTGGCTGAGCTATTTGGAAAAAATGGTCATGTCATTATAC
TCCCTCTCGTTTCTGGCCCCACCGTCACTCAAGCAACGCCTGAAATCTGACCGTAAACTTGGATTCAAGACTGTC
ATGTTCCGGCTTGTCCAGAAGCTTTTGACCAATCCTAACCCTGATTTCCGAATGCTTTTCTTCCTTTGCTCCCGT
AGAGCGATCGAAGCGATGAAGGTCCTTGACGATGAGGGGGATCTTTTTGATACCACTGAAACGACAACGGCCACC
CTATCCTTCGGTATGGGTTTTGCAGACTCGAGTGAAAGCGTTATGGAAAGTGGGTCCGGAATGCTAGTGGGTCAG
CGGGATGCTACTTGGGACATCATGATGACCAGGGAAGTGTGGAGTGATGAAACCATGTTCAAAGAGCTGGAAAGC
CTTGCGAGGGTGGAGTGTCATTGA
Transcript >Agabi119p4|007880
ATGCTCCCACAGAATGTGCAACAGCTGCGCTCTCAAGCTCAGCATCAGCCTCAGCAATCCAACATGAATCCCACT
GGCATGTCGGCAGGAACAATGGATCATCCGTCTTTCTTCAACAACCTCGATCCTTCCCAAGCGAAGCAAATGGCC
GCTCTTACCGCCGCTAACAACGCTCGAATGGCTACGAACAGCCGCCCACCGTCTTCCATGCCTGTGGGTAACGGA
GCAAGTTCGGGGCCATATCTCGGGGGAATTACACCCGCAGGTTACTCAAGTACAAAAAACGATCTTTTACCTGCT
GCGAATGGACATGCGAATTTTCAATTACCGAATAATCATGGCGTTTCACAAACGCCAAACTCGGCTGTCAACGCA
TCTTTCCTCGATCCTCCCATGTCACAGCCTTCCGCCCAAGCTGCATCCTTCAAACAGCGCCAGCACCAGTTCCTC
AATGGCCTCGCCAATGTCATGGCGAGGCGGAACACTCCTCTTCCCCCATCATTAACTGGCATCCCCTCCCCCAAT
TATGACCCGAACACCTCACCATGGTCTTACATCGAACCTTCGAATGAGGTGGGGTCTTTTCGTCTTGCAGGGCAG
GATGTCAGTCTTTTCAAACTCTGGGGTCTTGTCATGCAGCATGGAGGTGCCCAAGCGCTCAAGCACAACAATGGA
TGGTTTACTATAGCTAGCGAATTTAACCTACCGGAAGAGTTCCCTCAAGTGCAAGCTAATGGTTCGGCGTCTGTT
GTACTTATGTTGGAGCAGATGTACACTGGCATTCTATTTCCGTTTGAGGATATCTACAAGAAAAATTTACAGGAG
CAGCAGCGAAAAGCTCAGTTGGCGTCAAGACAAATTCCCATGGGACAGCCAGGGCAGATACGTACAATGCCAGCA
AATGGACCGCAACAAGGTCCCAACCAAATGCAGCGCGGTCCCGTTGGCACGATGGCTCACACTCCCCAAGCACCC
CATCAAAGAGCGGGTCTCAATGCTCAAGTCCCGCAGCACAATATCTCACTATCCCAGTCGACTTCGCAAGCTGGA
ATGGCTTCTGGATCCGAACCTAATCTTCTGGATAGTGATATTCAAGGCATCAAACGAAAGCTCGATATAGAAGAT
CCAGAAGGCAAACGTGCTAGGCAGAAAACAGACCCTTTAGAAGCTTCAACCGGTGGAGATGGATCCGCTTTTTTC
AATCAAACTCCGGGACTAAAGAGAACGCGCCAACCTCTGCGGCGCAAGATAGAATATGTACCCTGGGCACGCGAA
CTGGATACACATGGTGGCCGAAATCTACGACTGATAGAGCATGAATGGAACACCATCTCCCAGCGACGGCCCCTC
CGCGACATCAATGACTGGGGCGTCGTTGATATTGAAGGTCTTCGGATGTCTATTCGTTCGAAACTTCCAACCGAA
CTGTCATATGCTTTGACAACCGTCACTATCCTTTCCACAATGCGCAGTCAAAACCCGGGCTCTGGTTTTCCTATC
TTTCAATGTCCCGACCTCTTTGATGATATGCTTGACCTCTTGGAAGAGGAAGCGTTTGGAGAAATACAAGATGAT
ATTTCAGAGGATGCAATGGAGGTGTCTCCCATCGTTACGCAGCGCGATCTTCTCAACGCCATTTACGATGAAGGA
CTTAAACCCTTTGCTGCCCTAGAGGCTCACCAAGGGAGCAAGAAATTGACTTCGGGTTTTACTCCACGGCCAGCG
GATACTGTTCTTGCTATTGTCAATATTTTGCGGAATCTGTCAGTTGTTTCTGACAACTGGCAATTCTTATCGCAC
CATGATAAGATGCTCGATCTTCTGCTGCGGCTTTGTATGGTCCGTCGAGTAGACGGTTCACTTATCCCAGTATCG
CCAAACCTGTCCTTGTCAGATTTGGTTACAATTCGGAAAGATACCCTTTACACTCTCGTCAACCTTGTAGGTTTA
ATCAACTTCGGGCCTGCGTATTCACTGTCACAGCCGATGACTCGGGTTTCGAAACGTGTATTCGAGCTCGTGGCG
TCATATCTTGTCGACCCCTCCGAGGCTGTGTCTCCATTTTCATCGATCCAAGTCGCAGGACAACCATTAAATGCG
CATCCGAAGCCGTCAGCACTCACTGATGCTTCTCTAGAAGTTTTCACTCGCTTCAGCCTCTCAGATGCGAATCGA
CAAGCATTAGCCCAGACGATACCAAAACCATACATATGGGAGCTGTTCGAAGCGCTAGTCCACCGACTACCCATT
AACGACGTAGATTTCCAGCTGTTCGGGCGCGAAACGTGGCTGAGCTATTTGGAAAAAATGGTCATGTCATTATAC
TCCCTCTCGTTTCTGGCCCCACCGTCACTCAAGCAACGCCTGAAATCTGACCGTAAACTTGGATTCAAGACTGTC
ATGTTCCGGCTTGTCCAGAAGCTTTTGACCAATCCTAACCCTGATTTCCGAATGCTTTTCTTCCTTTGCTCCCGT
AGAGCGATCGAAGCGATGAAGGTCCTTGACGATGAGGGGGATCTTTTTGATACCACTGAAACGACAACGGCCACC
CTATCCTTCGGTATGGGTTTTGCAGACTCGAGTGAAAGCGTTATGGAAAGTGGGTCCGGAATGCTAGTGGGTCAG
CGGGATGCTACTTGGGACATCATGATGACCAGGGAAGTGTGGAGTGATGAAACCATGTTCAAAGAGCTGGAAAGC
CTTGCGAGGGTGGAGTGTCATTGA
Gene >Agabi119p4|007880
ATGCTGTAGGTCTCTGCTACTTTATCCTCTATATTATTGTCTCATTCTCGGTGATTCAGCCCACAGAATGTGCAA
CAGCTGCGCTCTCAAGCTCAGCATCAGCCTCAGCAATCCAACATGAATCCCACTGGCATGTCGGCAGGAACAATG
GATCATCCGTCTTTCTTCAACAACCTCGATCCTTCCCAAGCGAAGCAAATGGCCGCTCTTACCGCCGCTAACAAC
GCTCGAATGGCTACGAACAGCCGCCCACCGTCTTCCATGCCTGTGGGTAACGGAGCAAGTTCGGGGCCATATCTC
GGGGGAATTACACCCGCAGGTTACTCAAGTACAAAAAACGATCTTTTACCTGCTGCGAATGGACATGCGAATTTT
CAATTACCGAATAATCATGGCGTTTCACAAACGCCAAACTCGGCTGTCAACGCATCTTTCCTCGATCCTCCCATG
TCACAGCCTTCCGCCCAAGCTGCATCCTTCAAACAGCGCCAGCACCAGTTCCTCAATGGCCTCGCCAATGTCATG
GCGAGGCGGAACACTCCTCTTCCCCCATCATTAACTGGCATCCCCTCCCCCAATTATGACCCGAACACCTCACCA
TGGTCTTACATCGAACCTTCGAATGAGGTGGGGTCTTTTCGTCTTGCAGGGCAGGATGTCAGTCTTTTCAAACTC
TGGGGTCTTGTCATGCAGCATGGAGGTGCCCAAGCGGTAAGTTACGTGGTGACTTGTTTGCATCGTTAATTCTTA
TCAATCGCCTCTCAGCTCAAGCACAACAATGGATGGTTTACTATAGCTAGCGAATTTAACCTACCGGAAGAGTTC
CCTCAAGTGCAAGCTAATGGTTCGGCGTCTGTTGTACTTATGTTGGAGCAGATGTACACTGGCATTCTATTTCCG
TTTGAGGATATCTACAAGAAAAATTTACAGGAGCAGCAGCGAAAAGCTCAGTTGGCGTCAAGACAAATTCCCATG
GGACAGCCAGGGCAGATACGTACAATGCCAGCAAATGGACCGCAACAAGGTCCCAACCAAATGCAGCGCGGTCCC
GTTGGCACGATGGGTATGATAATCAACTAGTTCGAATTGTGCGCGAAGCTCATTATTCCGCAGCTCACACTCCCC
AAGCACCCCATCAAAGAGCGGGTCTCAATGCTCAAGTCCCGCAGCACAATATCTCACTATCCCAGTCGACTTCGC
AAGCTGGAATGGCTTCTGGATCCGAACCTAATCTTCTGGATAGTGATATTCAAGGCATCAAACGAAAGCTCGATA
TAGAAGATCCAGAAGGCAAACGTGCTAGGCAGAAAACAGGCATGTGCTTCCTGATTTCATGATTTGATTCAAGTG
ACTCAATTCTATGGATTAGACCCTTTAGAAGCTTCAGTAAGTCATCCCCTTTCCATGGAACATTACCCCTCATCT
GGGCTGCAGACCGGTGGAGATGGATCCGCTTTTTTCAATCAAACTCCGGGACTAAAGAGAACGCGCCAACCTCTG
CGGCGCAAGATAGAATATGTACCCTGGGCACGCGAACTGGATACACATGGTGGCCGAAATCTACGACTGATAGAG
CATGAATGGAACACCATCTCCCAGCGACGGCCCCTCCGCGACATCAATGACTGGGGCGTCGTTGATATTGAAGGT
CTTCGGATGTCTATTCGTTCGAAACTTCCAACCGAACTGTCATATGCTTTGACAACCGTCACTATCCTTTCCACA
ATGCGCAGTCAAAACCCGGGCTCTGGTTTTCCTATCTTTCAATGTCCCGACCTCTTTGATGATATGCTTGACCTC
TTGGAAGAGGAAGCGTTTGGAGAAATACAAGATGATATTTCAGAGGATGCAATGGAGGTGTCTCCCATCGTTACG
CAGCGCGATCTTCTCAACGCCATTTACGATGAAGGACTTAAACCCTTTGCTGCCCTAGAGGCTCACCAAGGGAGC
AAGAAATTGACTTCGGGTTTTACTCCACGGCCAGCGGATACTGTTCTTGCTATTGTCAATATTTTGCGGAATCTG
TCAGTTGTTTCTGACAACTGGCAATTCTTATCGCACCATGATAAGATGCTCGATCTTCTGCTGCGGCTTTGTATG
GTCCGTCGAGTAGACGGTTCACTTATCCCAGTATCGCCAAACCTGTCCTTGTCAGATTTGGTTACAATTCGGAAA
GATACCCTTTACACTCTCGTCAACCTTGTAGGTTTAATCAACTTCGGGCCTGCGTATTCACTGTCACAGCCGATG
ACTCGGGTTTCGAAACGTGTATTCGAGCTCGTGGCGTCATATCTTGTCGACCCCTCCGAGGCTGTGTCTCCATTT
TCATCGATCCAAGTCGCAGGACAACCATTAAATGCGCATCCGAAGCCGTCAGCACTCACTGATGCTTCTCTAGAA
GTTTTCACTCGCTTCAGCCTCTCAGATGCGAATCGACAAGCATTAGCCCAGACGATACCAAAACCATACATATGG
GAGCTGTTCGAAGCGCTAGTCCACCGACTACCCATTAACGACGTAGATTTCCAGCTGTTCGGGCGCGAAACGTGG
CTGAGCTATTTGGAAAAAATGGTCATGTCATTATACTCCCTCTCGTTTCTGGCCCCACCGTCACTCAAGCAACGC
CTGAAATCTGACCGTAAACTTGGATTCAAGACTGTCATGTTCCGGCTTGTCCAGAAGCTTTTGACCAATCCTAAC
CCTGATTTCCGAATGCTTTTCTTCCTTTGCTCCCGTAGAGCGATCGAAGCGATGAAGGTCCTTGACGATGAGGGG
GATCTTTTTGATACCACTGAAACGACAACGGCCACCCTATCCTTCGGTATGGGTTTTGCAGACTCGAGTGAAAGC
GTTATGGAAAGTGGGTCCGGAATGCTAGTGGGTCAGCGGGATGCTACTTGGGACATCATGATGACCAGGGAAGTG
TGGAGTGATGAAACCATGTTCAAAGAGCTGGAAAGCCTTGCGAGGGTGGAGTGTCATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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