Protein ID | Agabi119p4|007880 |
Gene name | |
Location | scaffold_01a:1850325..1853310 |
Strand | + |
Gene length (bp) | 2985 |
Transcript length (bp) | 2724 |
Coding sequence length (bp) | 2724 |
Protein length (aa) | 908 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01388 | ARID | ARID/BRIGHT DNA binding domain | 1.2E-15 | 146 | 266 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74365|SOL1_SCHPO | SWI/SNF chromatin-remodeling complex subunit sol1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sol1 PE=1 SV=1 | 137 | 611 | 4.0E-11 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003677 | DNA binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 44 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
ARID/BRIGHT |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|007880 MLPQNVQQLRSQAQHQPQQSNMNPTGMSAGTMDHPSFFNNLDPSQAKQMAALTAANNARMATNSRPPSSMPVGNG ASSGPYLGGITPAGYSSTKNDLLPAANGHANFQLPNNHGVSQTPNSAVNASFLDPPMSQPSAQAASFKQRQHQFL NGLANVMARRNTPLPPSLTGIPSPNYDPNTSPWSYIEPSNEVGSFRLAGQDVSLFKLWGLVMQHGGAQALKHNNG WFTIASEFNLPEEFPQVQANGSASVVLMLEQMYTGILFPFEDIYKKNLQEQQRKAQLASRQIPMGQPGQIRTMPA NGPQQGPNQMQRGPVGTMAHTPQAPHQRAGLNAQVPQHNISLSQSTSQAGMASGSEPNLLDSDIQGIKRKLDIED PEGKRARQKTDPLEASTGGDGSAFFNQTPGLKRTRQPLRRKIEYVPWARELDTHGGRNLRLIEHEWNTISQRRPL RDINDWGVVDIEGLRMSIRSKLPTELSYALTTVTILSTMRSQNPGSGFPIFQCPDLFDDMLDLLEEEAFGEIQDD ISEDAMEVSPIVTQRDLLNAIYDEGLKPFAALEAHQGSKKLTSGFTPRPADTVLAIVNILRNLSVVSDNWQFLSH HDKMLDLLLRLCMVRRVDGSLIPVSPNLSLSDLVTIRKDTLYTLVNLVGLINFGPAYSLSQPMTRVSKRVFELVA SYLVDPSEAVSPFSSIQVAGQPLNAHPKPSALTDASLEVFTRFSLSDANRQALAQTIPKPYIWELFEALVHRLPI NDVDFQLFGRETWLSYLEKMVMSLYSLSFLAPPSLKQRLKSDRKLGFKTVMFRLVQKLLTNPNPDFRMLFFLCSR RAIEAMKVLDDEGDLFDTTETTTATLSFGMGFADSSESVMESGSGMLVGQRDATWDIMMTREVWSDETMFKELES LARVECH* |
Coding | >Agabi119p4|007880 ATGCTCCCACAGAATGTGCAACAGCTGCGCTCTCAAGCTCAGCATCAGCCTCAGCAATCCAACATGAATCCCACT GGCATGTCGGCAGGAACAATGGATCATCCGTCTTTCTTCAACAACCTCGATCCTTCCCAAGCGAAGCAAATGGCC GCTCTTACCGCCGCTAACAACGCTCGAATGGCTACGAACAGCCGCCCACCGTCTTCCATGCCTGTGGGTAACGGA GCAAGTTCGGGGCCATATCTCGGGGGAATTACACCCGCAGGTTACTCAAGTACAAAAAACGATCTTTTACCTGCT GCGAATGGACATGCGAATTTTCAATTACCGAATAATCATGGCGTTTCACAAACGCCAAACTCGGCTGTCAACGCA TCTTTCCTCGATCCTCCCATGTCACAGCCTTCCGCCCAAGCTGCATCCTTCAAACAGCGCCAGCACCAGTTCCTC AATGGCCTCGCCAATGTCATGGCGAGGCGGAACACTCCTCTTCCCCCATCATTAACTGGCATCCCCTCCCCCAAT TATGACCCGAACACCTCACCATGGTCTTACATCGAACCTTCGAATGAGGTGGGGTCTTTTCGTCTTGCAGGGCAG GATGTCAGTCTTTTCAAACTCTGGGGTCTTGTCATGCAGCATGGAGGTGCCCAAGCGCTCAAGCACAACAATGGA TGGTTTACTATAGCTAGCGAATTTAACCTACCGGAAGAGTTCCCTCAAGTGCAAGCTAATGGTTCGGCGTCTGTT GTACTTATGTTGGAGCAGATGTACACTGGCATTCTATTTCCGTTTGAGGATATCTACAAGAAAAATTTACAGGAG CAGCAGCGAAAAGCTCAGTTGGCGTCAAGACAAATTCCCATGGGACAGCCAGGGCAGATACGTACAATGCCAGCA AATGGACCGCAACAAGGTCCCAACCAAATGCAGCGCGGTCCCGTTGGCACGATGGCTCACACTCCCCAAGCACCC CATCAAAGAGCGGGTCTCAATGCTCAAGTCCCGCAGCACAATATCTCACTATCCCAGTCGACTTCGCAAGCTGGA ATGGCTTCTGGATCCGAACCTAATCTTCTGGATAGTGATATTCAAGGCATCAAACGAAAGCTCGATATAGAAGAT CCAGAAGGCAAACGTGCTAGGCAGAAAACAGACCCTTTAGAAGCTTCAACCGGTGGAGATGGATCCGCTTTTTTC AATCAAACTCCGGGACTAAAGAGAACGCGCCAACCTCTGCGGCGCAAGATAGAATATGTACCCTGGGCACGCGAA CTGGATACACATGGTGGCCGAAATCTACGACTGATAGAGCATGAATGGAACACCATCTCCCAGCGACGGCCCCTC CGCGACATCAATGACTGGGGCGTCGTTGATATTGAAGGTCTTCGGATGTCTATTCGTTCGAAACTTCCAACCGAA CTGTCATATGCTTTGACAACCGTCACTATCCTTTCCACAATGCGCAGTCAAAACCCGGGCTCTGGTTTTCCTATC TTTCAATGTCCCGACCTCTTTGATGATATGCTTGACCTCTTGGAAGAGGAAGCGTTTGGAGAAATACAAGATGAT ATTTCAGAGGATGCAATGGAGGTGTCTCCCATCGTTACGCAGCGCGATCTTCTCAACGCCATTTACGATGAAGGA CTTAAACCCTTTGCTGCCCTAGAGGCTCACCAAGGGAGCAAGAAATTGACTTCGGGTTTTACTCCACGGCCAGCG GATACTGTTCTTGCTATTGTCAATATTTTGCGGAATCTGTCAGTTGTTTCTGACAACTGGCAATTCTTATCGCAC CATGATAAGATGCTCGATCTTCTGCTGCGGCTTTGTATGGTCCGTCGAGTAGACGGTTCACTTATCCCAGTATCG CCAAACCTGTCCTTGTCAGATTTGGTTACAATTCGGAAAGATACCCTTTACACTCTCGTCAACCTTGTAGGTTTA ATCAACTTCGGGCCTGCGTATTCACTGTCACAGCCGATGACTCGGGTTTCGAAACGTGTATTCGAGCTCGTGGCG TCATATCTTGTCGACCCCTCCGAGGCTGTGTCTCCATTTTCATCGATCCAAGTCGCAGGACAACCATTAAATGCG CATCCGAAGCCGTCAGCACTCACTGATGCTTCTCTAGAAGTTTTCACTCGCTTCAGCCTCTCAGATGCGAATCGA CAAGCATTAGCCCAGACGATACCAAAACCATACATATGGGAGCTGTTCGAAGCGCTAGTCCACCGACTACCCATT AACGACGTAGATTTCCAGCTGTTCGGGCGCGAAACGTGGCTGAGCTATTTGGAAAAAATGGTCATGTCATTATAC TCCCTCTCGTTTCTGGCCCCACCGTCACTCAAGCAACGCCTGAAATCTGACCGTAAACTTGGATTCAAGACTGTC ATGTTCCGGCTTGTCCAGAAGCTTTTGACCAATCCTAACCCTGATTTCCGAATGCTTTTCTTCCTTTGCTCCCGT AGAGCGATCGAAGCGATGAAGGTCCTTGACGATGAGGGGGATCTTTTTGATACCACTGAAACGACAACGGCCACC CTATCCTTCGGTATGGGTTTTGCAGACTCGAGTGAAAGCGTTATGGAAAGTGGGTCCGGAATGCTAGTGGGTCAG CGGGATGCTACTTGGGACATCATGATGACCAGGGAAGTGTGGAGTGATGAAACCATGTTCAAAGAGCTGGAAAGC CTTGCGAGGGTGGAGTGTCATTGA |
Transcript | >Agabi119p4|007880 ATGCTCCCACAGAATGTGCAACAGCTGCGCTCTCAAGCTCAGCATCAGCCTCAGCAATCCAACATGAATCCCACT GGCATGTCGGCAGGAACAATGGATCATCCGTCTTTCTTCAACAACCTCGATCCTTCCCAAGCGAAGCAAATGGCC GCTCTTACCGCCGCTAACAACGCTCGAATGGCTACGAACAGCCGCCCACCGTCTTCCATGCCTGTGGGTAACGGA GCAAGTTCGGGGCCATATCTCGGGGGAATTACACCCGCAGGTTACTCAAGTACAAAAAACGATCTTTTACCTGCT GCGAATGGACATGCGAATTTTCAATTACCGAATAATCATGGCGTTTCACAAACGCCAAACTCGGCTGTCAACGCA TCTTTCCTCGATCCTCCCATGTCACAGCCTTCCGCCCAAGCTGCATCCTTCAAACAGCGCCAGCACCAGTTCCTC AATGGCCTCGCCAATGTCATGGCGAGGCGGAACACTCCTCTTCCCCCATCATTAACTGGCATCCCCTCCCCCAAT TATGACCCGAACACCTCACCATGGTCTTACATCGAACCTTCGAATGAGGTGGGGTCTTTTCGTCTTGCAGGGCAG GATGTCAGTCTTTTCAAACTCTGGGGTCTTGTCATGCAGCATGGAGGTGCCCAAGCGCTCAAGCACAACAATGGA TGGTTTACTATAGCTAGCGAATTTAACCTACCGGAAGAGTTCCCTCAAGTGCAAGCTAATGGTTCGGCGTCTGTT GTACTTATGTTGGAGCAGATGTACACTGGCATTCTATTTCCGTTTGAGGATATCTACAAGAAAAATTTACAGGAG CAGCAGCGAAAAGCTCAGTTGGCGTCAAGACAAATTCCCATGGGACAGCCAGGGCAGATACGTACAATGCCAGCA AATGGACCGCAACAAGGTCCCAACCAAATGCAGCGCGGTCCCGTTGGCACGATGGCTCACACTCCCCAAGCACCC CATCAAAGAGCGGGTCTCAATGCTCAAGTCCCGCAGCACAATATCTCACTATCCCAGTCGACTTCGCAAGCTGGA ATGGCTTCTGGATCCGAACCTAATCTTCTGGATAGTGATATTCAAGGCATCAAACGAAAGCTCGATATAGAAGAT CCAGAAGGCAAACGTGCTAGGCAGAAAACAGACCCTTTAGAAGCTTCAACCGGTGGAGATGGATCCGCTTTTTTC AATCAAACTCCGGGACTAAAGAGAACGCGCCAACCTCTGCGGCGCAAGATAGAATATGTACCCTGGGCACGCGAA CTGGATACACATGGTGGCCGAAATCTACGACTGATAGAGCATGAATGGAACACCATCTCCCAGCGACGGCCCCTC CGCGACATCAATGACTGGGGCGTCGTTGATATTGAAGGTCTTCGGATGTCTATTCGTTCGAAACTTCCAACCGAA CTGTCATATGCTTTGACAACCGTCACTATCCTTTCCACAATGCGCAGTCAAAACCCGGGCTCTGGTTTTCCTATC TTTCAATGTCCCGACCTCTTTGATGATATGCTTGACCTCTTGGAAGAGGAAGCGTTTGGAGAAATACAAGATGAT ATTTCAGAGGATGCAATGGAGGTGTCTCCCATCGTTACGCAGCGCGATCTTCTCAACGCCATTTACGATGAAGGA CTTAAACCCTTTGCTGCCCTAGAGGCTCACCAAGGGAGCAAGAAATTGACTTCGGGTTTTACTCCACGGCCAGCG GATACTGTTCTTGCTATTGTCAATATTTTGCGGAATCTGTCAGTTGTTTCTGACAACTGGCAATTCTTATCGCAC CATGATAAGATGCTCGATCTTCTGCTGCGGCTTTGTATGGTCCGTCGAGTAGACGGTTCACTTATCCCAGTATCG CCAAACCTGTCCTTGTCAGATTTGGTTACAATTCGGAAAGATACCCTTTACACTCTCGTCAACCTTGTAGGTTTA ATCAACTTCGGGCCTGCGTATTCACTGTCACAGCCGATGACTCGGGTTTCGAAACGTGTATTCGAGCTCGTGGCG TCATATCTTGTCGACCCCTCCGAGGCTGTGTCTCCATTTTCATCGATCCAAGTCGCAGGACAACCATTAAATGCG CATCCGAAGCCGTCAGCACTCACTGATGCTTCTCTAGAAGTTTTCACTCGCTTCAGCCTCTCAGATGCGAATCGA CAAGCATTAGCCCAGACGATACCAAAACCATACATATGGGAGCTGTTCGAAGCGCTAGTCCACCGACTACCCATT AACGACGTAGATTTCCAGCTGTTCGGGCGCGAAACGTGGCTGAGCTATTTGGAAAAAATGGTCATGTCATTATAC TCCCTCTCGTTTCTGGCCCCACCGTCACTCAAGCAACGCCTGAAATCTGACCGTAAACTTGGATTCAAGACTGTC ATGTTCCGGCTTGTCCAGAAGCTTTTGACCAATCCTAACCCTGATTTCCGAATGCTTTTCTTCCTTTGCTCCCGT AGAGCGATCGAAGCGATGAAGGTCCTTGACGATGAGGGGGATCTTTTTGATACCACTGAAACGACAACGGCCACC CTATCCTTCGGTATGGGTTTTGCAGACTCGAGTGAAAGCGTTATGGAAAGTGGGTCCGGAATGCTAGTGGGTCAG CGGGATGCTACTTGGGACATCATGATGACCAGGGAAGTGTGGAGTGATGAAACCATGTTCAAAGAGCTGGAAAGC CTTGCGAGGGTGGAGTGTCATTGA |
Gene | >Agabi119p4|007880 ATGCTGTAGGTCTCTGCTACTTTATCCTCTATATTATTGTCTCATTCTCGGTGATTCAGCCCACAGAATGTGCAA CAGCTGCGCTCTCAAGCTCAGCATCAGCCTCAGCAATCCAACATGAATCCCACTGGCATGTCGGCAGGAACAATG GATCATCCGTCTTTCTTCAACAACCTCGATCCTTCCCAAGCGAAGCAAATGGCCGCTCTTACCGCCGCTAACAAC GCTCGAATGGCTACGAACAGCCGCCCACCGTCTTCCATGCCTGTGGGTAACGGAGCAAGTTCGGGGCCATATCTC GGGGGAATTACACCCGCAGGTTACTCAAGTACAAAAAACGATCTTTTACCTGCTGCGAATGGACATGCGAATTTT CAATTACCGAATAATCATGGCGTTTCACAAACGCCAAACTCGGCTGTCAACGCATCTTTCCTCGATCCTCCCATG TCACAGCCTTCCGCCCAAGCTGCATCCTTCAAACAGCGCCAGCACCAGTTCCTCAATGGCCTCGCCAATGTCATG GCGAGGCGGAACACTCCTCTTCCCCCATCATTAACTGGCATCCCCTCCCCCAATTATGACCCGAACACCTCACCA TGGTCTTACATCGAACCTTCGAATGAGGTGGGGTCTTTTCGTCTTGCAGGGCAGGATGTCAGTCTTTTCAAACTC TGGGGTCTTGTCATGCAGCATGGAGGTGCCCAAGCGGTAAGTTACGTGGTGACTTGTTTGCATCGTTAATTCTTA TCAATCGCCTCTCAGCTCAAGCACAACAATGGATGGTTTACTATAGCTAGCGAATTTAACCTACCGGAAGAGTTC CCTCAAGTGCAAGCTAATGGTTCGGCGTCTGTTGTACTTATGTTGGAGCAGATGTACACTGGCATTCTATTTCCG TTTGAGGATATCTACAAGAAAAATTTACAGGAGCAGCAGCGAAAAGCTCAGTTGGCGTCAAGACAAATTCCCATG GGACAGCCAGGGCAGATACGTACAATGCCAGCAAATGGACCGCAACAAGGTCCCAACCAAATGCAGCGCGGTCCC GTTGGCACGATGGGTATGATAATCAACTAGTTCGAATTGTGCGCGAAGCTCATTATTCCGCAGCTCACACTCCCC AAGCACCCCATCAAAGAGCGGGTCTCAATGCTCAAGTCCCGCAGCACAATATCTCACTATCCCAGTCGACTTCGC AAGCTGGAATGGCTTCTGGATCCGAACCTAATCTTCTGGATAGTGATATTCAAGGCATCAAACGAAAGCTCGATA TAGAAGATCCAGAAGGCAAACGTGCTAGGCAGAAAACAGGCATGTGCTTCCTGATTTCATGATTTGATTCAAGTG ACTCAATTCTATGGATTAGACCCTTTAGAAGCTTCAGTAAGTCATCCCCTTTCCATGGAACATTACCCCTCATCT GGGCTGCAGACCGGTGGAGATGGATCCGCTTTTTTCAATCAAACTCCGGGACTAAAGAGAACGCGCCAACCTCTG CGGCGCAAGATAGAATATGTACCCTGGGCACGCGAACTGGATACACATGGTGGCCGAAATCTACGACTGATAGAG CATGAATGGAACACCATCTCCCAGCGACGGCCCCTCCGCGACATCAATGACTGGGGCGTCGTTGATATTGAAGGT CTTCGGATGTCTATTCGTTCGAAACTTCCAACCGAACTGTCATATGCTTTGACAACCGTCACTATCCTTTCCACA ATGCGCAGTCAAAACCCGGGCTCTGGTTTTCCTATCTTTCAATGTCCCGACCTCTTTGATGATATGCTTGACCTC TTGGAAGAGGAAGCGTTTGGAGAAATACAAGATGATATTTCAGAGGATGCAATGGAGGTGTCTCCCATCGTTACG CAGCGCGATCTTCTCAACGCCATTTACGATGAAGGACTTAAACCCTTTGCTGCCCTAGAGGCTCACCAAGGGAGC AAGAAATTGACTTCGGGTTTTACTCCACGGCCAGCGGATACTGTTCTTGCTATTGTCAATATTTTGCGGAATCTG TCAGTTGTTTCTGACAACTGGCAATTCTTATCGCACCATGATAAGATGCTCGATCTTCTGCTGCGGCTTTGTATG GTCCGTCGAGTAGACGGTTCACTTATCCCAGTATCGCCAAACCTGTCCTTGTCAGATTTGGTTACAATTCGGAAA GATACCCTTTACACTCTCGTCAACCTTGTAGGTTTAATCAACTTCGGGCCTGCGTATTCACTGTCACAGCCGATG ACTCGGGTTTCGAAACGTGTATTCGAGCTCGTGGCGTCATATCTTGTCGACCCCTCCGAGGCTGTGTCTCCATTT TCATCGATCCAAGTCGCAGGACAACCATTAAATGCGCATCCGAAGCCGTCAGCACTCACTGATGCTTCTCTAGAA GTTTTCACTCGCTTCAGCCTCTCAGATGCGAATCGACAAGCATTAGCCCAGACGATACCAAAACCATACATATGG GAGCTGTTCGAAGCGCTAGTCCACCGACTACCCATTAACGACGTAGATTTCCAGCTGTTCGGGCGCGAAACGTGG CTGAGCTATTTGGAAAAAATGGTCATGTCATTATACTCCCTCTCGTTTCTGGCCCCACCGTCACTCAAGCAACGC CTGAAATCTGACCGTAAACTTGGATTCAAGACTGTCATGTTCCGGCTTGTCCAGAAGCTTTTGACCAATCCTAAC CCTGATTTCCGAATGCTTTTCTTCCTTTGCTCCCGTAGAGCGATCGAAGCGATGAAGGTCCTTGACGATGAGGGG GATCTTTTTGATACCACTGAAACGACAACGGCCACCCTATCCTTCGGTATGGGTTTTGCAGACTCGAGTGAAAGC GTTATGGAAAGTGGGTCCGGAATGCTAGTGGGTCAGCGGGATGCTACTTGGGACATCATGATGACCAGGGAAGTG TGGAGTGATGAAACCATGTTCAAAGAGCTGGAAAGCCTTGCGAGGGTGGAGTGTCATTGA |