© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|007540 |
| Gene name | |
| Location | scaffold_01a:1779137..1780636 |
| Strand | - |
| Gene length (bp) | 1499 |
| Transcript length (bp) | 1185 |
| Coding sequence length (bp) | 1185 |
| Protein length (aa) | 395 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06027 | SLC35F | Solute carrier family 35 | 1.2E-05 | 152 | 289 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03730|YMB8_YEAST | Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1 | 31 | 393 | 8.0E-61 |
| sp|O94654|YGF3_SCHPO | Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC405.03c PE=3 SV=1 | 53 | 389 | 3.0E-55 |
| sp|Q04083|THI74_YEAST | Thiamine-repressible mitochondrial transport protein THI74 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI74 PE=1 SV=1 | 38 | 391 | 2.0E-48 |
| sp|A6QL92|S35F5_BOVIN | Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1 | 20 | 383 | 1.0E-40 |
| sp|Q5R6J3|S35F5_PONAB | Solute carrier family 35 member F5 OS=Pongo abelii GN=SLC35F5 PE=2 SV=1 | 20 | 388 | 1.0E-39 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03730|YMB8_YEAST | Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1 | 31 | 393 | 8.0E-61 |
| sp|O94654|YGF3_SCHPO | Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC405.03c PE=3 SV=1 | 53 | 389 | 3.0E-55 |
| sp|Q04083|THI74_YEAST | Thiamine-repressible mitochondrial transport protein THI74 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI74 PE=1 SV=1 | 38 | 391 | 2.0E-48 |
| sp|A6QL92|S35F5_BOVIN | Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1 | 20 | 383 | 1.0E-40 |
| sp|Q5R6J3|S35F5_PONAB | Solute carrier family 35 member F5 OS=Pongo abelii GN=SLC35F5 PE=2 SV=1 | 20 | 388 | 1.0E-39 |
| sp|Q8R314|S35F5_MOUSE | Solute carrier family 35 member F5 OS=Mus musculus GN=Slc35f5 PE=2 SV=1 | 108 | 388 | 1.0E-38 |
| sp|Q4R794|S35F5_MACFA | Solute carrier family 35 member F5 OS=Macaca fascicularis GN=SLC35F5 PE=2 SV=1 | 131 | 388 | 4.0E-38 |
| sp|Q8WV83|S35F5_HUMAN | Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=2 SV=1 | 131 | 388 | 2.0E-36 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 40 | 62 | 22 |
| 2 | 72 | 91 | 19 |
| 3 | 150 | 172 | 22 |
| 4 | 176 | 195 | 19 |
| 5 | 202 | 224 | 22 |
| 6 | 244 | 266 | 22 |
| 7 | 278 | 300 | 22 |
| 8 | 315 | 337 | 22 |
| 9 | 344 | 366 | 22 |
| 10 | 371 | 388 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|007540 MSSTVHELDVLEARSPITSDRPRPQTPELLQRQHKANDYWVGLALFIVVVLLWTAGGFVTQALYKNGYDKPFMVT YMSTCPFALYLVPRGIRWVREARHGMLGHNARPSTGYQRLSVSEILDETDEDRPIDTALSDTEPLTVRQTANVAF VFCWLWFIANWAVNAAISYTTIASSTIVTSTSGFFTLGIGQIFGVERFTRLKLLAVFISFLGVVLVSLSDSQAST ASGQSSSLDSTLRSTDSSLPLFGDVLALISAFFYAVYVVFLKVKIGDESRIDTQLLLGFVGLFNLLTCWPLGVLL HWFHIERFELPTMSAQWYALLAITIIFLLSDYLYVLAMLKTTPLVVTIGISLTIPVAVVGDFIVNASFRGQVIVG AILVLMSFIAIGLDGSKEL* |
| Coding | >Agabi119p4|007540 ATGTCCTCGACTGTACACGAATTGGACGTCCTAGAAGCACGTAGCCCTATTACCAGTGATCGTCCAAGACCTCAG ACTCCAGAACTTCTACAAAGACAACACAAGGCCAATGATTATTGGGTTGGGCTAGCTCTCTTTATAGTGGTTGTC CTTCTCTGGACGGCGGGTGGTTTTGTAACACAGGCACTGTATAAGAATGGTTACGATAAACCATTTATGGTAACA TATATGTCCACTTGTCCATTCGCTTTATACTTGGTGCCTCGAGGCATACGTTGGGTCAGAGAGGCAAGGCACGGC ATGTTAGGTCACAATGCGAGACCGTCAACAGGGTATCAACGGCTGTCGGTTTCGGAAATCCTAGACGAGACGGAC GAAGACAGGCCCATTGACACAGCTCTGTCAGATACCGAGCCATTGACAGTAAGGCAGACAGCCAATGTGGCATTT GTCTTCTGTTGGCTATGGTTTATTGCGAATTGGGCTGTAAACGCGGCGATAAGTTATACCACCATTGCGAGCTCT ACCATAGTTACTAGTACAAGTGGTTTTTTTACTCTTGGTATTGGGCAAATTTTTGGAGTCGAGAGGTTTACTCGG CTCAAACTACTCGCCGTATTCATCAGTTTTCTCGGCGTTGTCCTCGTTTCACTCTCTGACTCGCAGGCTTCAACT GCAAGTGGCCAAAGCTCGAGCTTAGACTCCACCCTACGTTCCACAGACAGTTCTCTTCCCCTGTTCGGAGATGTC CTCGCGCTCATTTCAGCATTCTTCTATGCCGTTTACGTAGTTTTCCTCAAGGTGAAGATCGGAGACGAGTCGCGC ATTGATACGCAACTGCTCCTTGGTTTTGTTGGACTGTTCAATTTGTTAACATGCTGGCCACTTGGGGTGTTATTA CATTGGTTTCACATAGAGAGGTTCGAGCTGCCCACTATGTCCGCGCAGTGGTACGCCCTTCTTGCCATTACAATA ATTTTCCTACTGAGCGACTATTTATATGTTCTCGCAATGCTCAAAACTACACCACTCGTTGTAACTATTGGTATA AGTCTTACAATCCCTGTTGCGGTAGTAGGTGACTTTATTGTTAACGCATCTTTCCGAGGGCAGGTGATAGTAGGA GCAATCTTAGTCTTAATGAGCTTCATTGCGATTGGGTTGGATGGCTCGAAGGAGTTGTGA |
| Transcript | >Agabi119p4|007540 ATGTCCTCGACTGTACACGAATTGGACGTCCTAGAAGCACGTAGCCCTATTACCAGTGATCGTCCAAGACCTCAG ACTCCAGAACTTCTACAAAGACAACACAAGGCCAATGATTATTGGGTTGGGCTAGCTCTCTTTATAGTGGTTGTC CTTCTCTGGACGGCGGGTGGTTTTGTAACACAGGCACTGTATAAGAATGGTTACGATAAACCATTTATGGTAACA TATATGTCCACTTGTCCATTCGCTTTATACTTGGTGCCTCGAGGCATACGTTGGGTCAGAGAGGCAAGGCACGGC ATGTTAGGTCACAATGCGAGACCGTCAACAGGGTATCAACGGCTGTCGGTTTCGGAAATCCTAGACGAGACGGAC GAAGACAGGCCCATTGACACAGCTCTGTCAGATACCGAGCCATTGACAGTAAGGCAGACAGCCAATGTGGCATTT GTCTTCTGTTGGCTATGGTTTATTGCGAATTGGGCTGTAAACGCGGCGATAAGTTATACCACCATTGCGAGCTCT ACCATAGTTACTAGTACAAGTGGTTTTTTTACTCTTGGTATTGGGCAAATTTTTGGAGTCGAGAGGTTTACTCGG CTCAAACTACTCGCCGTATTCATCAGTTTTCTCGGCGTTGTCCTCGTTTCACTCTCTGACTCGCAGGCTTCAACT GCAAGTGGCCAAAGCTCGAGCTTAGACTCCACCCTACGTTCCACAGACAGTTCTCTTCCCCTGTTCGGAGATGTC CTCGCGCTCATTTCAGCATTCTTCTATGCCGTTTACGTAGTTTTCCTCAAGGTGAAGATCGGAGACGAGTCGCGC ATTGATACGCAACTGCTCCTTGGTTTTGTTGGACTGTTCAATTTGTTAACATGCTGGCCACTTGGGGTGTTATTA CATTGGTTTCACATAGAGAGGTTCGAGCTGCCCACTATGTCCGCGCAGTGGTACGCCCTTCTTGCCATTACAATA ATTTTCCTACTGAGCGACTATTTATATGTTCTCGCAATGCTCAAAACTACACCACTCGTTGTAACTATTGGTATA AGTCTTACAATCCCTGTTGCGGTAGTAGGTGACTTTATTGTTAACGCATCTTTCCGAGGGCAGGTGATAGTAGGA GCAATCTTAGTCTTAATGAGCTTCATTGCGATTGGGTTGGATGGCTCGAAGGAGTTGTGA |
| Gene | >Agabi119p4|007540 ATGTCCTCGACTGTACACGAATTGGACGTCCTAGAAGCACGTAGCCCTATTACCAGTGATCGTCCAAGACCTCAG ACTCCAGAACTTCTACAAAGACAACACAAGGCCAATGATTATTGGGTTGGGCTAGCTCTCTTTATAGTGGTTGTC CTTCTCTGGACGGCGGGTGGTTTTGTAACACAGGTGAGATCAACCAGTATTGAACAAACTTGAGGTCTTCATTAT AAGTATAGGCACTGTATAAGAATGGTTACGATAAACCATTTATGTAAGGTCACCTACATTCTTTCGAGGCACCAG CAAAAATTCATTCGCTGGTTCAGGGTAACATATATGTCCACTTGTCCATTCGCTTTATACTTGGTGCCTCGAGGC ATACGTTGGGTCAGAGAGGCAAGGCACGGCATGTTAGGCGAGTCAAATGGGATATACTTTCCCAATCCAACTGAC CTGATCTCGGAAAAGGTCACAATGCGAGACCGTCAACAGGGTATCAACGGCTGTCGGTTTCGGAAATCCTAGACG AGACGGACGAAGACAGGCCCATTGACACAGCTCTGTCAGATACCGAGCCATTGACAGTAAGGCAGACAGCCAATG TGGCATTTGTCTTCTGTTGGCTATGGTTTATTGCGAATTGGGCTGTAAACGCGGCGATAAGTTATACCACCATTG CGAGCTCTACCATAGTTACTAGTACAAGTGGTGAGTGATATTTCGACCAAGTCATTCACTGTCGTCTTCATTGAT CAAACTACCAGGTTTTTTTACTCTTGGTATTGGGCAAATTTTTGGAGTCGAGAGGTTTACTCGGCTCAAACTACT CGCCGTATTCATCAGGTATGAATATACGGAATACCATTTGTTAATCTCAAGATTTTCAGTTTTCTCGGCGTTGTC CTCGTTTCACTCTCTGACTCGCAGGCTTCAACTGCAAGTGGCCAAAGCTCGAGCTTAGACTCCACCCTACGTTCC ACAGACAGTTCTCTTCCCCTGTTCGGAGATGTCCTCGCGCTCATTTCAGCATTCTTCTATGCCGTTTACGTAGTT TTCCTCAAGGTGAAGATCGGAGACGAGTCGCGCATTGATACGCAACTGCTCCTTGGTTTTGTTGGACTGTTCAAT TTGTTAACATGCTGGCCACTTGGGGTGTTATTACATTGGTTTCACATAGAGAGGTTCGAGCTGCCCACTATGTCC GCGCAGTGGTACGCCCTTCTTGCCATTGTAGGTCCAACTTCCGTCCGAGGTGGCCAATTTGAAGAACTAACTGAC CACTATAGACAATAATTTTCCTACTGAGCGACTATTTATATGTTCTCGCAATGCTCAAAACTACACCACTCGTTG TAACTATTGGTATAAGTCTTACAATCCCTGTTGCGGTAGTAGGTGACTTTATTGTTAACGCATCTTTCCGAGGGC AGGTGATAGTAGGAGCAATCTTAGTCTTAATGAGCTTCATTGCGATTGGGTTGGATGGCTCGAAGGAGTTGTGA |