Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|006880
Gene name
Locationscaffold_01a:1650554..1651211
Strand+
Gene length (bp)657
Transcript length (bp)411
Coding sequence length (bp)411
Protein length (aa) 137

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 7.7E-19 13 78

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1 3 136 1.0E-33
sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=1 SV=1 10 123 2.0E-29
sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1 10 122 2.0E-29
sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1 10 123 2.0E-29
sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM1 PE=1 SV=1 7 125 5.0E-29
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1 3 136 1.0E-33
sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=1 SV=1 10 123 2.0E-29
sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1 10 122 2.0E-29
sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1 10 123 2.0E-29
sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM1 PE=1 SV=1 7 125 5.0E-29
sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1 10 95 5.0E-26
sp|Q8LFL8|LSM1B_ARATH Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1 10 119 2.0E-23
sp|Q945P8|LSM1A_ARATH Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1 5 93 3.0E-23
sp|Q5RCP3|LSM8_PONAB U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3 10 93 2.0E-10
sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3 10 93 2.0E-10
sp|O95777|LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3 10 93 2.0E-10
sp|Q3ZCE0|LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3 10 93 2.0E-10
sp|Q8VYI0|LSM8_ARATH Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1 7 102 4.0E-09
sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1 12 93 2.0E-08
sp|Q1ZXD5|LSM8_DICDI Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1 19 102 3.0E-08
sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG PE=1 SV=1 17 81 7.0E-08
sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum GN=snrpG PE=3 SV=1 13 77 2.0E-07
sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1 7 81 4.0E-07
sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1 SV=1 17 77 2.0E-06
sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1 17 77 2.0E-06
sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1 17 77 2.0E-06
sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1 18 94 2.0E-06
sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0525a PE=3 SV=1 1 77 2.0E-06
sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1 7 77 6.0E-06
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|006880
MDSLIPFTTSGALMDCVDRKMLVILRDGRKLHGVLRSYDQFANLVLEDTVERIHHGDTFAENWHGLFLIRGENVV
LLGEIDLDKEDEVPLQQVDYRLLEPYVKQDVELKKQRDELKAKILYDHKGFCKEGGEGDGY*
Coding >Agabi119p4|006880
ATGGATTCTCTCATTCCCTTCACCACTTCAGGCGCTCTAATGGATTGCGTGGACAGAAAGATGTTAGTTATTCTA
CGAGACGGTCGAAAACTACATGGCGTACTTCGATCTTATGATCAATTCGCAAATCTCGTTCTAGAAGACACCGTT
GAACGAATACATCATGGAGATACCTTTGCAGAAAACTGGCACGGCTTATTTCTCATACGTGGAGAAAATGTAGTG
CTGCTAGGTGAAATAGATTTAGATAAAGAAGACGAAGTACCCCTGCAACAGGTCGACTATCGTCTATTAGAGCCC
TATGTCAAACAGGATGTCGAACTTAAAAAGCAGCGCGACGAGCTCAAGGCCAAGATTCTCTATGATCACAAAGGA
TTTTGTAAGGAAGGTGGCGAGGGTGATGGTTATTGA
Transcript >Agabi119p4|006880
ATGGATTCTCTCATTCCCTTCACCACTTCAGGCGCTCTAATGGATTGCGTGGACAGAAAGATGTTAGTTATTCTA
CGAGACGGTCGAAAACTACATGGCGTACTTCGATCTTATGATCAATTCGCAAATCTCGTTCTAGAAGACACCGTT
GAACGAATACATCATGGAGATACCTTTGCAGAAAACTGGCACGGCTTATTTCTCATACGTGGAGAAAATGTAGTG
CTGCTAGGTGAAATAGATTTAGATAAAGAAGACGAAGTACCCCTGCAACAGGTCGACTATCGTCTATTAGAGCCC
TATGTCAAACAGGATGTCGAACTTAAAAAGCAGCGCGACGAGCTCAAGGCCAAGATTCTCTATGATCACAAAGGA
TTTTGTAAGGAAGGTGGCGAGGGTGATGGTTATTGA
Gene >Agabi119p4|006880
ATGGATTCTCTCATTCCCTTCACCACTTCAGGCGCTCTAATGGATTGCGTGGACAGTACGTCTACTACCTCAGTA
TACACACTCTCCAGCATACCCTGAGCAACCCACTCCCCTCCCTTCTCCCTTGTCGTTTTTATCACAAAAAATGCA
AAACCCCACCCTTCCATCATCGACGTGCATTCAGGAAAGATGTTAGTTATTCTACGAGACGGTCGAAAACTACAT
GGCGTACTTCGATCTTATGATCAATTCGGTACGTGACTCCAAAAGACGAAAAGCCTCCAAATCCTACAAGTTCTA
TATCTCTTCACAGCAAATCTCGTTCTAGAAGACACCGTTGAACGAATACATCATGGAGATACCTTTGCAGAAAAC
TGGCACGGCTTATTTCTCATACGTGGAGAAAATGTAGTGCTGCTAGGTGAAATAGTATGTCTTTTATCCATTCCT
CCGTCACCATCGTGTAAAAAAACACACACAAAACAGGATTTAGATAAAGAAGACGAAGTACCCCTGCAACAGGTC
GACTATCGTCTATTAGAGCCCTATGTCAAACAGGATGTCGAACTTAAAAAGCAGCGCGACGAGCTCAAGGCCAAG
ATTCTCTATGATCACAAAGGATTTTGTAAGGAAGGTGGCGAGGGTGATGGTTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail