© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|006000 |
| Gene name | |
| Location | scaffold_01a:1447961..1450493 |
| Strand | + |
| Gene length (bp) | 2532 |
| Transcript length (bp) | 2007 |
| Coding sequence length (bp) | 2007 |
| Protein length (aa) | 669 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04851 | ResIII | Type III restriction enzyme, res subunit | 2.7E-18 | 30 | 203 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 1.8E-15 | 284 | 381 |
| PF00270 | DEAD | DEAD/DEAH box helicase | 4.0E-14 | 33 | 203 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1MTR1|IRC3_SCHPO | Putative mitochondrial ATP-dependent helicase irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=irc3 PE=3 SV=2 | 31 | 634 | 5.0E-104 |
| sp|Q06683|IRC3_YEAST | Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC3 PE=1 SV=1 | 27 | 624 | 5.0E-89 |
| sp|P33919|YEJH_ECOLI | Uncharacterized protein YejH OS=Escherichia coli (strain K12) GN=yejH PE=3 SV=2 | 29 | 395 | 6.0E-24 |
| sp|P24125|V51K_BPL79 | 51.5 kDa protein OS=Lactococcus phage (isolate 7-9) PE=3 SV=1 | 55 | 380 | 2.0E-18 |
| sp|Q914K8|Y022_SIFVH | Putative helicase 22 OS=Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi) GN=SIFV0022 PE=3 SV=1 | 31 | 396 | 3.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1MTR1|IRC3_SCHPO | Putative mitochondrial ATP-dependent helicase irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=irc3 PE=3 SV=2 | 31 | 634 | 5.0E-104 |
| sp|Q06683|IRC3_YEAST | Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC3 PE=1 SV=1 | 27 | 624 | 5.0E-89 |
| sp|P33919|YEJH_ECOLI | Uncharacterized protein YejH OS=Escherichia coli (strain K12) GN=yejH PE=3 SV=2 | 29 | 395 | 6.0E-24 |
| sp|P24125|V51K_BPL79 | 51.5 kDa protein OS=Lactococcus phage (isolate 7-9) PE=3 SV=1 | 55 | 380 | 2.0E-18 |
| sp|Q914K8|Y022_SIFVH | Putative helicase 22 OS=Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi) GN=SIFV0022 PE=3 SV=1 | 31 | 396 | 3.0E-16 |
| sp|P08956|T1RK_ECOLI | Type I restriction enzyme EcoKI R protein OS=Escherichia coli (strain K12) GN=hsdR PE=3 SV=3 | 27 | 441 | 2.0E-14 |
| sp|Q07736|T1RA_ECOLX | Type I restriction enzyme EcoAI R protein OS=Escherichia coli GN=hsdR PE=3 SV=1 | 24 | 399 | 3.0E-12 |
| sp|Q47281|T1RE_ECOLX | Type I restriction enzyme EcoEI R protein OS=Escherichia coli GN=hsdR PE=3 SV=1 | 24 | 436 | 6.0E-11 |
| sp|Q62167|DDX3X_MOUSE | ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3 | 59 | 382 | 9.0E-07 |
| sp|Q8RXK6|RH8_ARATH | DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1 | 60 | 382 | 9.0E-07 |
| sp|P24346|DDX3_XENLA | Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1 | 59 | 382 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0005488 | binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|006000 MQCFSRPSSVFSRLYATAASAKADIASGIVLRPYQHECIHSCLDALSSGCTRIGVSLPTGSGKTTVFLSLLSQIP APLTDTNATRSLVVVNSIELARQSAEQAARLFPHWSVEIEQGTKHNASGMADLTVATYQTLVRAERVRKFDPSLL KAIIIDEAHHSAAPSYRKLLSSFDPNILHPDRTVQPPLLPHAIPIIGFSATFSRHDGLALGSVFERIVYHRDFLD MIKEQWLCDMRFTSVKADLNLKEVPLNAQTGDFNPTSLAEQMNRRPINELVVKSWIDRAGARKSSLVFCVDIEHV LALTQTFRQHGIDARSIDSRTNPNERKLLVSQFRQGVFPVLVNCAILTEGADIPNIDCIVVARPTRSPNVYAQMI GRGMRLSPATGKGDCRILDFVDVTTQINVISLPSLFGLDPLEVADEENVETLEFKSQAKAEMSTSQTTDHLSDPQ FADATITYIDYEDPFSLMKDSSNAPNMFRLSRNAWVGCGDNIYVLPCLQFGDVRIQPVQSEEGEDLFEAYFLPQL DEKKAKAAKLPMFMRRRNILKASTLAEAVKGCDTYVHKKVLKGNLINGVLRSARWRKDPATEAQKNFCRKKWLNK KKGQGIISEENIDKITKGEAGNMITRLKHGAKSRYEKKLKEITKVRNATLNEQARLAKYKVQVGPIAT* |
| Coding | >Agabi119p4|006000 ATGCAATGCTTTTCCCGCCCTTCCAGTGTGTTTTCAAGACTATATGCAACTGCCGCGTCCGCAAAAGCAGACATT GCATCGGGTATTGTTTTGCGACCTTACCAGCACGAGTGTATTCACTCATGTCTTGATGCGTTGTCGTCGGGCTGC ACGAGAATTGGTGTATCTTTACCAACCGGCTCTGGAAAAACAACCGTGTTTCTGTCTTTGCTGTCCCAAATTCCG GCACCGCTCACTGATACTAATGCTACGCGGTCACTGGTCGTAGTGAATAGCATAGAACTCGCAAGGCAATCGGCG GAGCAGGCTGCTAGGTTGTTCCCTCATTGGTCTGTAGAAATAGAGCAGGGAACAAAACATAATGCCAGTGGTATG GCTGATCTCACAGTCGCGACGTACCAGACTTTAGTAAGGGCCGAGCGGGTCAGGAAGTTTGATCCTAGCCTGTTG AAAGCCATTATCATCGACGAAGCACACCACTCTGCGGCTCCTTCGTATCGGAAGCTCTTATCCTCTTTTGATCCA AATATCCTTCATCCCGACCGCACCGTCCAGCCTCCCCTCCTTCCACACGCTATACCTATAATAGGGTTTTCCGCT ACTTTCAGTCGTCACGATGGTTTGGCTCTAGGATCTGTTTTTGAGCGTATTGTCTATCATCGTGACTTTTTGGAT ATGATCAAGGAGCAGTGGCTCTGTGATATGAGATTTACAAGCGTCAAAGCAGACCTCAATCTCAAAGAAGTTCCA TTGAATGCACAAACCGGTGATTTTAACCCTACCAGCCTGGCAGAACAGATGAACAGGAGGCCTATCAATGAACTG GTTGTTAAAAGCTGGATTGACCGTGCTGGCGCTCGTAAATCCAGTCTTGTCTTTTGCGTCGACATCGAGCATGTA TTGGCCTTGACACAGACTTTCAGACAGCACGGTATAGACGCCCGTAGCATCGATTCCCGCACAAATCCTAATGAG CGCAAGTTGCTTGTCTCGCAATTTCGACAAGGAGTATTCCCAGTGCTCGTCAACTGCGCCATCTTGACCGAAGGC GCGGATATACCCAATATCGACTGTATTGTTGTGGCGCGGCCCACACGGTCACCAAATGTCTATGCTCAAATGATT GGTAGAGGAATGCGGCTGTCTCCTGCGACAGGCAAGGGAGACTGCCGTATTCTAGATTTCGTTGACGTCACGACG CAAATCAATGTTATTTCGTTACCGAGTCTTTTCGGTTTGGACCCGTTAGAGGTAGCAGATGAAGAAAATGTTGAG ACGTTGGAGTTCAAATCACAAGCCAAGGCGGAAATGTCTACCTCTCAGACAACAGATCATCTCTCCGACCCACAA TTTGCTGATGCGACAATCACCTACATTGACTATGAAGATCCTTTTTCTCTCATGAAGGATTCCTCTAATGCTCCC AATATGTTTAGGCTCAGTCGCAATGCCTGGGTTGGATGTGGTGACAACATTTACGTGCTACCCTGTCTTCAATTC GGAGACGTTAGGATACAACCCGTACAGAGCGAAGAAGGCGAAGACCTCTTCGAAGCGTATTTTCTTCCACAGCTA GACGAAAAGAAGGCTAAAGCTGCCAAACTTCCTATGTTTATGCGTAGGCGAAACATACTCAAAGCCTCTACCCTT GCAGAAGCAGTCAAAGGCTGTGATACGTATGTCCATAAGAAAGTTCTGAAAGGAAACTTGATTAATGGAGTCTTA AGGAGTGCAAGATGGAGAAAAGATCCAGCAACTGAGGCCCAGAAGAACTTTTGCAGAAAGAAGTGGTTGAACAAG AAGAAGGGGCAAGGAATCATTTCCGAAGAGAATATCGACAAGATAACAAAAGGAGAGGCTGGCAATATGATCACT CGGCTGAAACATGGAGCAAAGTCGCGGTATGAGAAGAAGTTAAAAGAAATCACCAAGGTAAGAAATGCAACATTA AATGAGCAGGCTAGATTGGCAAAGTATAAAGTGCAAGTTGGACCCATTGCAACATAG |
| Transcript | >Agabi119p4|006000 ATGCAATGCTTTTCCCGCCCTTCCAGTGTGTTTTCAAGACTATATGCAACTGCCGCGTCCGCAAAAGCAGACATT GCATCGGGTATTGTTTTGCGACCTTACCAGCACGAGTGTATTCACTCATGTCTTGATGCGTTGTCGTCGGGCTGC ACGAGAATTGGTGTATCTTTACCAACCGGCTCTGGAAAAACAACCGTGTTTCTGTCTTTGCTGTCCCAAATTCCG GCACCGCTCACTGATACTAATGCTACGCGGTCACTGGTCGTAGTGAATAGCATAGAACTCGCAAGGCAATCGGCG GAGCAGGCTGCTAGGTTGTTCCCTCATTGGTCTGTAGAAATAGAGCAGGGAACAAAACATAATGCCAGTGGTATG GCTGATCTCACAGTCGCGACGTACCAGACTTTAGTAAGGGCCGAGCGGGTCAGGAAGTTTGATCCTAGCCTGTTG AAAGCCATTATCATCGACGAAGCACACCACTCTGCGGCTCCTTCGTATCGGAAGCTCTTATCCTCTTTTGATCCA AATATCCTTCATCCCGACCGCACCGTCCAGCCTCCCCTCCTTCCACACGCTATACCTATAATAGGGTTTTCCGCT ACTTTCAGTCGTCACGATGGTTTGGCTCTAGGATCTGTTTTTGAGCGTATTGTCTATCATCGTGACTTTTTGGAT ATGATCAAGGAGCAGTGGCTCTGTGATATGAGATTTACAAGCGTCAAAGCAGACCTCAATCTCAAAGAAGTTCCA TTGAATGCACAAACCGGTGATTTTAACCCTACCAGCCTGGCAGAACAGATGAACAGGAGGCCTATCAATGAACTG GTTGTTAAAAGCTGGATTGACCGTGCTGGCGCTCGTAAATCCAGTCTTGTCTTTTGCGTCGACATCGAGCATGTA TTGGCCTTGACACAGACTTTCAGACAGCACGGTATAGACGCCCGTAGCATCGATTCCCGCACAAATCCTAATGAG CGCAAGTTGCTTGTCTCGCAATTTCGACAAGGAGTATTCCCAGTGCTCGTCAACTGCGCCATCTTGACCGAAGGC GCGGATATACCCAATATCGACTGTATTGTTGTGGCGCGGCCCACACGGTCACCAAATGTCTATGCTCAAATGATT GGTAGAGGAATGCGGCTGTCTCCTGCGACAGGCAAGGGAGACTGCCGTATTCTAGATTTCGTTGACGTCACGACG CAAATCAATGTTATTTCGTTACCGAGTCTTTTCGGTTTGGACCCGTTAGAGGTAGCAGATGAAGAAAATGTTGAG ACGTTGGAGTTCAAATCACAAGCCAAGGCGGAAATGTCTACCTCTCAGACAACAGATCATCTCTCCGACCCACAA TTTGCTGATGCGACAATCACCTACATTGACTATGAAGATCCTTTTTCTCTCATGAAGGATTCCTCTAATGCTCCC AATATGTTTAGGCTCAGTCGCAATGCCTGGGTTGGATGTGGTGACAACATTTACGTGCTACCCTGTCTTCAATTC GGAGACGTTAGGATACAACCCGTACAGAGCGAAGAAGGCGAAGACCTCTTCGAAGCGTATTTTCTTCCACAGCTA GACGAAAAGAAGGCTAAAGCTGCCAAACTTCCTATGTTTATGCGTAGGCGAAACATACTCAAAGCCTCTACCCTT GCAGAAGCAGTCAAAGGCTGTGATACGTATGTCCATAAGAAAGTTCTGAAAGGAAACTTGATTAATGGAGTCTTA AGGAGTGCAAGATGGAGAAAAGATCCAGCAACTGAGGCCCAGAAGAACTTTTGCAGAAAGAAGTGGTTGAACAAG AAGAAGGGGCAAGGAATCATTTCCGAAGAGAATATCGACAAGATAACAAAAGGAGAGGCTGGCAATATGATCACT CGGCTGAAACATGGAGCAAAGTCGCGGTATGAGAAGAAGTTAAAAGAAATCACCAAGGTAAGAAATGCAACATTA AATGAGCAGGCTAGATTGGCAAAGTATAAAGTGCAAGTTGGACCCATTGCAACATAG |
| Gene | >Agabi119p4|006000 ATGCAATGCTTTTCCCGCCCTTCCAGTGTGTTTTCAAGACTATATGCAACTGCCGCGTCCGCAAAAGCAGACATT GCATCGGGTATTGTTTTGCGACCTTACCAGCACGAGTGTATTCACTCATGTCTTGATGCGTTGTCGTCGGGCTGC ACGAGAATTGGTGTATCTTTACCAACCGGCTCTGGAAAAACAACCGTGTTTCTGTCTTTGCTGTCCCAAATTCCG GCACCGCTCACTGATACTAATGCTACGCGGTCACTGGTCGTAGTGAATAGCATAGAACTCGCAAGGCAATCGGCG GAGCAGGCTGCTAGGTTGTTCCCTCATTGGTCTGTAGAAATAGAGCAGGGAACAAAACATAATGCCAGTGGTATG GCTGATCTGTAGGTGTTGTAGTACTCCCCTCAAATGCACACTGAATAGCCTTGAAGCACAGTCGCGACGTACCAG ACTTTAGTAAGGGCCGAGCGGGTCAGGAAGTTTGATCCTAGCCTGTTGAAAGCCATTATCATCGACGAAGCACAC CACTCTGCGGCTCCTTCGTAAGTACCTTACTTCCTTGTCAGTCTGTTTATACTTCTCAAATAATGGCAGGTATCG GAAGCTCTTATCCTCTTTTGATCCAAATATCCTTCATCCCGACCGCACCGTCCAGCCTCCCCTCCTTCCACACGC TATACCTATAATAGGGTTTTCCGCTACTTTCAGTCGTCACGATGGTTTGGCTCTAGGATCTGTTTTTGAGCGTAT TGTCTATCATCGTGACTTTTTGGATATGATCAAGGAGCAGTGGTATTTATGACTTTCGCCTACGTTTCAGCAAAC TTGACTTGCTATACAGGCTCTGTGATATGAGATTTACAAGCGTCAAAGCAGACCTCAATCTCAAAGAAGTTCCAT TGAATGCACAAACCGGTGATTTTAACCCTACCAGCCTGGCAGAACAGATGAACAGGAGGCCTATCAATGAACTGG TTGTTAAAAGCTGGATTGACCGTGCTGGTAAGCGCGTTCTGCAGTCATGTCTTCACATCCTTACGGACTTCGTTA TGCCAGGCGCTCGTAAATCCAGTCTTGTCTTTTGCGTCGACATCGAGCATGTATTGGCCTTGACACAGACTTTCA GACAGCACGGTATAGACGCCCGTAGCATCGATTCCCGCACAAATCCTAATGAGCGCAAGTTGCTTGTCTCGCAAT TTCGACAAGGAGTATTCCCAGTGCTCGTCAACTGCGGTCAGTGGAATGTAATCTGTCAATTGTTACCTCATATTC TGACACAAGAAACAAGCCATCTTGACCGAAGGCGCGGATATACCCAATATCGACTGTATTGTTGTGGCGCGGCCC ACACGGTCACCAAATGTCTATGCTCAAATGGTTAGGGGTTTGGACCAGCCCTATCAATTCCACCTCAGCTGACTG CTTCCCAAGATTGGTAGAGGAATGCGGCTGTCTCCTGCGACAGGCAAGGGAGACTGCCGTATTCTAGATTTCGTT GACGTCACGACGCAAATCAATGTTATTTCGTTACCGAGTCTTTTCGGTTTGGACCCGTTAGAGGTAGCAGATGAA GGTACATATCTGATTGACCCAGCCCAATAGCAACACACTCATTTTAGCATAGAAAATGTTGAGACGTTGGAGTTC AAATCACAAGCCAAGGCGGAAATGTCTACCTCTCAGACAACAGATCATCTCTCCGACCCACAATTTGCTGATGCG ACAATCACCTACATTGACTATGAAGATCCTTTTTCTCTCATGAAGGATTCCTCTAATGCTCCCAATATGTTTAGG CTCAGTCGCAATGCCTGGGTTGGATGTGGTGACAACATTTACGTGCTACCCTGTCTTCAATTCGGAGACGTTAGG ATACAACCCGTACAGAGCGAAGAAGGTATCATCATTTATGTAGAGTCTGTGGTGAGGCAATTTGGCTAATGCTCT ACTCAGGCGAAGACCTCTTCGAAGCGTATTTTCTTCCACAGCTAGACGAAAAGAAGGCTAAAGCTGCCAAACTTC CTATGTTTATGCGTAGGCGAAACATACTCAAAGCCTCTACCCTTGCAGAAGCAGTCAAAGGCTGTGATACGTATG TCCATAAGAAAGTTCTGAAAGGAAACTTGATTAATGGGTACGTCTACCTGTGTCATATCGGCGAGGTATAACAAC AAAAGTCAATTCCGTAGAGTCTTAAGGAGTGCAAGATGGAGAAAAGATCCAGCAACTGAGGCCCAGAAGAACTTT TGCAGAAAGAAGTGGTTGAACAAGAAGAAGGGGCAAGGAATCATTTCCGAAGAGAATATCGACAAGATAACAAAA GGAGAGGCTGGCAATATGATCACTCGGCTGAAACATGGAGCAAAGGCAAGTTGTTCCCTGCTTCAAGAACAGTTT AGCCTGATTCTTTCTTGATAGTCGCGGTATGAGAAGAAGTTAAAAGAAATCACCAAGGTAAGAAATGCAACATTA AATGAGCAGGCTAGATTGGCAAAGTATAAAGTGCAAGTTGGACCCATTGCAACATAG |