© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|005920 |
| Gene name | |
| Location | scaffold_01a:1433338..1435109 |
| Strand | + |
| Gene length (bp) | 1771 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08238 | Sel1 | Sel1 repeat | 2.2E-05 | 167 | 205 |
| PF08238 | Sel1 | Sel1 repeat | 2.1E-03 | 206 | 238 |
| PF08238 | Sel1 | Sel1 repeat | 1.5E-05 | 243 | 276 |
| PF08238 | Sel1 | Sel1 repeat | 3.2E-01 | 282 | 319 |
| PF08238 | Sel1 | Sel1 repeat | 5.2E-08 | 321 | 356 |
| PF08238 | Sel1 | Sel1 repeat | 1.9E-02 | 359 | 393 |
| PF08238 | Sel1 | Sel1 repeat | 1.5E-04 | 395 | 430 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P34226|SKT5_YEAST | Protein SKT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKT5 PE=1 SV=1 | 87 | 443 | 2.0E-74 |
| sp|Q09897|CHR3_SCHPO | Chitin synthase regulatory factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr3 PE=1 SV=1 | 98 | 438 | 9.0E-54 |
| sp|O94614|CHR4_SCHPO | Chitin synthase regulatory factor 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr4 PE=1 SV=4 | 91 | 442 | 1.0E-33 |
| sp|A6ZR53|SHC1_YEAS7 | Protein SHC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SHC1 PE=3 SV=1 | 81 | 333 | 2.0E-32 |
| sp|P39000|SHC1_YEAST | Protein SHC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHC1 PE=2 SV=1 | 81 | 333 | 3.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P34226|SKT5_YEAST | Protein SKT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKT5 PE=1 SV=1 | 87 | 443 | 2.0E-74 |
| sp|Q09897|CHR3_SCHPO | Chitin synthase regulatory factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr3 PE=1 SV=1 | 98 | 438 | 9.0E-54 |
| sp|O94614|CHR4_SCHPO | Chitin synthase regulatory factor 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr4 PE=1 SV=4 | 91 | 442 | 1.0E-33 |
| sp|A6ZR53|SHC1_YEAS7 | Protein SHC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SHC1 PE=3 SV=1 | 81 | 333 | 2.0E-32 |
| sp|P39000|SHC1_YEAST | Protein SHC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHC1 PE=2 SV=1 | 81 | 333 | 3.0E-32 |
| sp|Q07622|ACK1_YEAST | Activator of C kinase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACK1 PE=1 SV=1 | 141 | 442 | 4.0E-32 |
| sp|O94486|CHR2_SCHPO | Chitin synthase regulatory factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr2 PE=3 SV=1 | 68 | 390 | 2.0E-26 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 158 | 430 | 8.0E-14 |
| sp|P77234|YBEQ_ECOLI | Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | 157 | 442 | 1.0E-11 |
| sp|Q94C27|FB84_ARATH | F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1 | 177 | 361 | 2.0E-11 |
| sp|O59732|CHR1_SCHPO | Chitin synthase regulatory factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr1 PE=1 SV=1 | 286 | 410 | 4.0E-11 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 159 | 352 | 2.0E-09 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 134 | 426 | 4.0E-09 |
| sp|Q5TEA6|SE1L2_HUMAN | Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 | 153 | 429 | 8.0E-09 |
| sp|O25021|HCPE_HELPY | Putative beta-lactamase HcpE OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=hcpE PE=3 SV=1 | 153 | 431 | 1.0E-08 |
| sp|Q9ZG88|PODJ_CAUCR | Localization factor PodJL OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=podJ PE=1 SV=2 | 277 | 436 | 2.0E-08 |
| sp|B8GXA0|PODJ_CAUCN | Localization factor PodJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1 | 277 | 436 | 2.0E-08 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 145 | 429 | 4.0E-08 |
| sp|P77296|YBET_ECOLI | Uncharacterized protein YbeT OS=Escherichia coli (strain K12) GN=ybeT PE=2 SV=1 | 318 | 437 | 4.0E-08 |
| sp|Q9ZMJ9|HCPE_HELPJ | Putative beta-lactamase HcpE OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=hcpE PE=3 SV=1 | 153 | 431 | 5.0E-08 |
| sp|Q5XI05|SE1L2_RAT | Protein sel-1 homolog 2 OS=Rattus norvegicus GN=Sel1l2 PE=2 SV=1 | 135 | 429 | 7.0E-08 |
| sp|Q9ESM7|SE1L1_MESAU | Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | 158 | 427 | 8.0E-08 |
| sp|Q9UBV2|SE1L1_HUMAN | Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | 158 | 427 | 9.0E-08 |
| sp|Q9Z2G6|SE1L1_MOUSE | Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=1 SV=2 | 158 | 427 | 1.0E-07 |
| sp|Q14154|DELE_HUMAN | Death ligand signal enhancer OS=Homo sapiens GN=KIAA0141 PE=1 SV=3 | 70 | 371 | 1.0E-07 |
| sp|Q3V172|SE1L2_MOUSE | Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1 | 135 | 429 | 1.0E-07 |
| sp|Q80Z70|SE1L1_RAT | Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | 158 | 427 | 1.0E-07 |
| sp|Q9DCV6|DELE_MOUSE | Death ligand signal enhancer OS=Mus musculus GN=Kiaa0141 PE=2 SV=1 | 179 | 373 | 2.0E-07 |
| sp|Q9ZG88|PODJ_CAUCR | Localization factor PodJL OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=podJ PE=1 SV=2 | 120 | 269 | 5.0E-07 |
| sp|B8GXA0|PODJ_CAUCN | Localization factor PodJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1 | 120 | 269 | 5.0E-07 |
| sp|Q9LM25|HRD3A_ARATH | ERAD-associated E3 ubiquitin-protein ligase component HRD3A OS=Arabidopsis thaliana GN=HRD3A PE=1 SV=1 | 160 | 336 | 6.0E-07 |
| sp|P77296|YBET_ECOLI | Uncharacterized protein YbeT OS=Escherichia coli (strain K12) GN=ybeT PE=2 SV=1 | 109 | 276 | 2.0E-06 |
| sp|P60924|DELE_RAT | Death ligand signal enhancer OS=Rattus norvegicus GN=Dele PE=2 SV=1 | 179 | 373 | 5.0E-06 |
| sp|Q80TS8|SE1L3_MOUSE | Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3 | 221 | 429 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|005920 MMEAPLAPHQPWDSPHSFPTPDLDDHDDFFAATQSQPVLQTAPSTHLQPDSSHLPHSSSVATHSIRAPSPPPNGP LLDHSHLRPGKQAALLSHERTLELYRANAKKTQDPDLQFEFAVFMIDASKSLPIPPNTPGNLLVVERALEKREDL VREATSLLKRLADRGHPASQYFLADCYANGIGTVKGKQDFDKAYPLFVLAAKHGHPDAAYRAGTCCENGWGCRRE SPKAVQFFRKAAAALHPGAMYRLGIAELNGELGLSKSPKEGVKWLKRSAEHATAEFPHALHELALLHERGIENVV FVDYEYSTELLAQAAELGYPPSAYRLGECYEYGKMGCPQDPALSIHYYNIAAQQSHRDACFALTAWYLVGSPGVL PQSDTEAFLWAQKAAEAGLAKAMYACGYFLEVGIGTQINTQEAMTHYKRAADKGDKRAIQRLKNSQNGPVHQPGG PGSVLHQSAMADFFGRKAVISGAVYSSLYYTPDYYSSCIQFHIYVLSSSVCLFYTISDYHYFFYVRI* |
| Coding | >Agabi119p4|005920 ATGATGGAGGCCCCCCTCGCCCCTCACCAGCCCTGGGATTCTCCCCACAGCTTTCCGACGCCAGACCTCGACGAC CACGACGACTTCTTCGCCGCCACCCAGAGTCAGCCCGTTCTCCAGACTGCTCCCTCCACTCACCTCCAGCCCGAT TCATCGCACCTCCCCCACTCCAGCTCGGTCGCAACTCACTCTATCCGTGCCCCGTCACCCCCTCCCAATGGTCCC CTCCTCGACCACTCCCATCTACGTCCCGGGAAACAGGCTGCCCTCCTCTCGCACGAACGCACCCTGGAGCTCTAT CGTGCCAATGCAAAGAAAACCCAGGATCCCGATCTCCAGTTCGAGTTCGCCGTCTTCATGATTGACGCTTCCAAA TCCCTTCCCATCCCCCCCAACACACCGGGAAATCTCTTGGTCGTAGAAAGGGCTCTCGAAAAGCGCGAAGATCTC GTTCGTGAAGCAACATCCCTCCTCAAACGCTTGGCTGATAGAGGCCATCCCGCCAGCCAATACTTCTTGGCTGAC TGCTATGCCAACGGCATTGGAACCGTAAAGGGAAAACAAGACTTTGATAAAGCTTATCCTCTCTTCGTCCTCGCC GCCAAACATGGCCACCCCGATGCCGCTTACCGCGCCGGTACTTGCTGCGAGAACGGCTGGGGCTGTCGCAGAGAA TCTCCCAAGGCTGTCCAGTTTTTCCGAAAAGCTGCCGCTGCCCTCCACCCCGGTGCCATGTACCGTCTGGGAATC GCCGAGCTCAACGGTGAACTTGGCCTCTCCAAGAGCCCCAAGGAGGGCGTCAAATGGCTCAAGAGGAGCGCTGAA CATGCCACAGCAGAATTCCCCCATGCCCTTCATGAGCTGGCATTACTACACGAACGCGGGATCGAGAACGTCGTC TTTGTTGACTATGAATATTCAACAGAGCTCCTCGCACAGGCTGCAGAGCTCGGTTACCCCCCCAGTGCGTACCGA CTGGGCGAGTGCTACGAGTACGGGAAAATGGGTTGCCCCCAAGATCCCGCTCTCTCAATCCACTATTACAACATA GCTGCGCAACAGAGCCACCGAGACGCATGCTTCGCCCTGACAGCGTGGTATCTCGTCGGCTCGCCTGGCGTTCTT CCGCAGTCCGACACGGAGGCCTTCTTGTGGGCTCAAAAAGCCGCAGAAGCTGGCCTTGCAAAGGCTATGTATGCT TGTGGATATTTTCTCGAGGTGGGAATCGGAACGCAAATCAATACCCAAGAGGCAATGACTCACTATAAACGAGCC GCTGACAAGGGGGACAAGCGTGCGATACAGCGGCTAAAGAACTCGCAGAATGGGCCTGTGCATCAGCCCGGTGGA CCTGGGTCCGTTTTACACCAGAGCGCCATGGCCGACTTTTTTGGGCGAAAAGCTGTCATTTCTGGCGCGGTTTAT TCGTCCCTCTATTACACCCCGGATTATTATTCTTCCTGCATCCAATTCCATATTTATGTCCTTTCCTCATCTGTA TGTTTATTCTATACCATCTCGGACTATCACTATTTTTTCTACGTACGCATATAA |
| Transcript | >Agabi119p4|005920 ATGATGGAGGCCCCCCTCGCCCCTCACCAGCCCTGGGATTCTCCCCACAGCTTTCCGACGCCAGACCTCGACGAC CACGACGACTTCTTCGCCGCCACCCAGAGTCAGCCCGTTCTCCAGACTGCTCCCTCCACTCACCTCCAGCCCGAT TCATCGCACCTCCCCCACTCCAGCTCGGTCGCAACTCACTCTATCCGTGCCCCGTCACCCCCTCCCAATGGTCCC CTCCTCGACCACTCCCATCTACGTCCCGGGAAACAGGCTGCCCTCCTCTCGCACGAACGCACCCTGGAGCTCTAT CGTGCCAATGCAAAGAAAACCCAGGATCCCGATCTCCAGTTCGAGTTCGCCGTCTTCATGATTGACGCTTCCAAA TCCCTTCCCATCCCCCCCAACACACCGGGAAATCTCTTGGTCGTAGAAAGGGCTCTCGAAAAGCGCGAAGATCTC GTTCGTGAAGCAACATCCCTCCTCAAACGCTTGGCTGATAGAGGCCATCCCGCCAGCCAATACTTCTTGGCTGAC TGCTATGCCAACGGCATTGGAACCGTAAAGGGAAAACAAGACTTTGATAAAGCTTATCCTCTCTTCGTCCTCGCC GCCAAACATGGCCACCCCGATGCCGCTTACCGCGCCGGTACTTGCTGCGAGAACGGCTGGGGCTGTCGCAGAGAA TCTCCCAAGGCTGTCCAGTTTTTCCGAAAAGCTGCCGCTGCCCTCCACCCCGGTGCCATGTACCGTCTGGGAATC GCCGAGCTCAACGGTGAACTTGGCCTCTCCAAGAGCCCCAAGGAGGGCGTCAAATGGCTCAAGAGGAGCGCTGAA CATGCCACAGCAGAATTCCCCCATGCCCTTCATGAGCTGGCATTACTACACGAACGCGGGATCGAGAACGTCGTC TTTGTTGACTATGAATATTCAACAGAGCTCCTCGCACAGGCTGCAGAGCTCGGTTACCCCCCCAGTGCGTACCGA CTGGGCGAGTGCTACGAGTACGGGAAAATGGGTTGCCCCCAAGATCCCGCTCTCTCAATCCACTATTACAACATA GCTGCGCAACAGAGCCACCGAGACGCATGCTTCGCCCTGACAGCGTGGTATCTCGTCGGCTCGCCTGGCGTTCTT CCGCAGTCCGACACGGAGGCCTTCTTGTGGGCTCAAAAAGCCGCAGAAGCTGGCCTTGCAAAGGCTATGTATGCT TGTGGATATTTTCTCGAGGTGGGAATCGGAACGCAAATCAATACCCAAGAGGCAATGACTCACTATAAACGAGCC GCTGACAAGGGGGACAAGCGTGCGATACAGCGGCTAAAGAACTCGCAGAATGGGCCTGTGCATCAGCCCGGTGGA CCTGGGTCCGTTTTACACCAGAGCGCCATGGCCGACTTTTTTGGGCGAAAAGCTGTCATTTCTGGCGCGGTTTAT TCGTCCCTCTATTACACCCCGGATTATTATTCTTCCTGCATCCAATTCCATATTTATGTCCTTTCCTCATCTGTA TGTTTATTCTATACCATCTCGGACTATCACTATTTTTTCTACGTACGCATATAA |
| Gene | >Agabi119p4|005920 ATGATGGAGGCCCCCCTCGCCCCTCACCAGCCCTGGGATTCTCCCCACAGCTTTCCGACGCCAGACCTCGACGAC CACGACGACTTCTTCGCCGCCACCCAGAGTCAGCCCGTTCTCCAGACTGCTCCCTCCACTCACCTCCAGCCCGAT TCATCGCACCTCCCCCACTCCAGCTCGGTCGCAACTCACTCTATCCGTGCCCCGTCACCCCCTCCCAATGGTCCC CTCCTCGACCACTCCCATCTACGTCCCGGGAAACAGGCTGCCCTCCTCTCGCACGAACGCACCCTGGAGCTCTAT CGTGCCAATGCAAAGAAAACCCAGGATCCCGATCTCCAGTTCGAGTTCGCCGTCTTCATGATTGACGCTTCCAAA TCCCTTCCCATCCCCCCCAACACACCGGGAAATCTCTTGGTCGTAGAAAGGGCTCTCGAAAAGCGCGAAGATCTC GTTCGTGAAGCAACATCCCTCCTCAAACGCTTGGCTGATAGAGGCCATCCCGCCAGCCAATACTTCTTGGCTGAC TGCTATGCCAACGGCATTGGAACCGTAAAGGGAAAACAAGACTTTGATAAAGCTTATCCTCTCTTCGTCCTCGCC GCCAAACATGGCCACCCCGATGCCGCTTACCGCGCCGGTACTTGCTGCGAGAACGGCTGGGGCTGTCGCAGAGAA TCTCCCAAGGCTGTCCAGTTTTTCCGAAAAGCTGCCGCTGCCCTCCACCCCGGTGCCATGTACCGTCTGGGAATC GCCGAGCTCAACGGTGAACTTGGCCTCTCCAAGAGCCCCAAGGAGGGCGTCAAATGGCTCAAGAGGAGCGCTGAA CATGCCACAGCAGAATTCCCCCATGCCCTTCATGAGCTGGCATTACTACACGAACGCGGGATCGAGAACGTCGTC TTTGTTGACTATGAATATTCAACAGAGCTCCTCGCACAGGCTGCAGAGCTCGGTTACCCCCCCAGTGCGTACCGA CTGGGCGAGTGCTACGAGTACGGGAAAATGGGTTGCCCCCAAGATCCCGCTCTCTCAATCCACTATTACGTCTGT ACTTTTTTTTTTTTTCCTCTTTTTTATAATTCTCATCACTTCTTAGAACATAGCTGCGCAACAGAGCCACCGAGA CGCATGCTTCGCCCTGACAGCGTGGTATCTCGTCGGCTCGCCTGGCGTTCTTCCGCAGTCCGACACGGAGGCCTT CTTGTGGGCTCAAAAAGCCGCAGAAGCTGGCCTTGCAAAGGCTATGTATGCTTGTGGATATTTTCTCGAGGTGGG AATCGGAACGCAAATCAATACCCAAGAGTGCGCTCTTACCCTTCTCTCATTCCGACTATTACGCTAAATACCACT TAGGGCAATGACTCACTATAAACGAGCCGCTGACAAGGGGGACAAGCGTGCGATACAGCGGCTAAAGAACTCGCA GAATGGGCCTGTGCATCAGCCCGGTGGACCTGGGTCCGTTTTACACCGTGAGCAAGGTGATTCCGAGTTGGGAAA GAATAAAGATAAGGACTGTGTCATCATGTAGAGAGCGCCATGGCCGACTTTTTTGGGGTGCGTCTCATGTCATTC GACGGGATCAACGGGGGATAACCTTATTGCGTTTTAGCGAAAAGCTGTCATTTCTGGCGCGGTTTATTCGTCCCT CTATTACACCCCGGATTATTATTCTTCCTGCATCCAATTCCATATTTATGTCCTTTCCTCATCTGTATGTTTATT CTATACCATCTCGGACTATCACTATTTTTTCTACGTACGCATATAA |