Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	Agabi119p4|005660
Gene name
Location	scaffold_01a:1374511..1377029
Strand	+
Gene length (bp)	2518
Transcript length (bp)	2217
Coding sequence length (bp)	2217
Protein length (aa)	739

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF11957	efThoc1	THO complex subunit 1 transcription elongation factor	7.1E-89	80	529

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q8R3N6|THOC1_MOUSE	THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1	77	492	1.0E-42
sp|Q96FV9|THOC1_HUMAN	THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1	77	492	3.0E-42
sp|Q93VM9|THOC1_ARATH	THO complex subunit 1 OS=Arabidopsis thaliana GN=THO1 PE=1 SV=1	76	491	4.0E-39
sp|Q9URT2|YJU3_SCHPO	Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1	83	524	1.0E-27

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 24	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4|005660 MLPLQPFLDTLLSSLPPLPISQAQYNSLVKNTLDDSRGKSSPDNRKNQWEYLLKNEVFKLAMTEGVAFREDSARY YEQVKVRLDLVLTFTEQDACEQTFPFIVLQDLLETQTINSCSHIFSWIEARSSRLTEGMVPQKGKALILLRTLND LLRRLSKSGSTTVFCGRILTFLSGVFPLGERSGVNLRGEYGPTWEDVWYPKHDEDTNTEMTDFRGESSRSDEVPE DNAMQVDSNKETKATPTGQAKGDNKEDFYNTFWHLQYPFSKPSIFANKEAFPQFQEAIDKVLPVIKEATAKERAM MGSRVAAGVVLTKRKREPEAEESNVNEYFFAKFLTSPDLLDLEIADTHFRRQFLFQLMILLQHLLTFTKGAKAAW ATQRNRSLQMDFTLEAEDTQWVQDTLSKSMEELKQTTPNGRAFAETTQTILEREKNWVKWKNELCAPFDKEPWST RVDDRNVGLFEATKELRERMRTTREDWPFTLGSAPLTDIWQMGYCDLHDLENAFQPGDVKDFVKKIKLEDNRIEL RRKTLAQKEAPAQAQDAGKEAAGDDAVMSVDAPATPAPTPAPTPATLASAPSSQASSVAMASPLHPSLPPRPNAQ TQPLSNTPAPAPASSPAPPAPALPSPVKKLEALDSQIAKFDENKQRWAWLALRTARDQHLQHFGKIGTGDVGLLV QEIEKERQEREKVQKAEETGSTIDEGNPKTPASEPLMRTDSQSSVVTAGVPKSDPDVRAEMQS*
Coding	>Agabi119p4|005660 ATGCTCCCTCTTCAACCGTTTCTCGACACCCTTCTCTCATCTCTCCCACCGCTTCCTATATCTCAAGCTCAGTAT AACTCCCTCGTAAAAAACACCCTTGACGACTCTCGCGGAAAATCCTCTCCTGACAATAGGAAGAATCAATGGGAA TATCTATTGAAAAATGAAGTGTTCAAGTTAGCGATGACTGAGGGAGTGGCTTTTAGGGAAGACAGTGCCAGGTAT TATGAACAAGTTAAAGTTCGACTAGACCTCGTCCTGACTTTCACTGAACAAGATGCCTGCGAGCAAACTTTCCCA TTCATTGTGTTACAAGATCTCCTAGAGACGCAAACCATCAATTCGTGTTCGCATATCTTTTCCTGGATCGAGGCT CGCTCCTCAAGGCTTACTGAAGGCATGGTGCCTCAGAAGGGAAAGGCTCTCATTCTCCTTCGTACGCTGAATGAT TTGCTCCGTCGTCTATCAAAATCAGGATCTACCACCGTTTTCTGTGGTCGGATTTTAACATTCCTAAGTGGTGTT TTCCCTCTGGGTGAGCGCAGCGGCGTCAACCTGCGGGGAGAATATGGTCCAACTTGGGAGGATGTATGGTATCCA AAACACGATGAGGATACAAATACGGAGATGACGGACTTCCGGGGAGAGTCTTCGCGGTCGGACGAAGTCCCCGAG GATAATGCAATGCAAGTTGACTCCAACAAAGAAACTAAAGCAACGCCGACGGGTCAGGCCAAAGGAGACAACAAA GAAGATTTTTACAATACATTTTGGCACCTTCAGTACCCATTTTCGAAACCTTCGATCTTCGCCAACAAAGAGGCT TTCCCTCAGTTCCAAGAAGCTATCGATAAGGTTTTGCCCGTCATCAAGGAAGCGACAGCAAAAGAAAGGGCTATG ATGGGAAGTCGAGTTGCGGCTGGTGTCGTTCTGACCAAGAGGAAACGAGAACCTGAGGCCGAGGAGTCGAATGTT AATGAGTATTTTTTCGCCAAATTTTTGACCTCTCCCGACCTTCTTGATCTCGAGATTGCCGACACGCATTTCCGT CGTCAATTCCTCTTCCAGTTGATGATCTTACTGCAACATCTTCTCACCTTTACCAAAGGTGCAAAGGCTGCATGG GCAACACAACGGAATAGGTCATTACAAATGGACTTCACCTTGGAGGCGGAAGATACACAATGGGTTCAGGATACG CTAAGCAAGTCCATGGAGGAGCTCAAACAAACTACTCCAAATGGCCGCGCATTTGCTGAGACAACTCAAACAATC TTAGAGCGCGAGAAGAATTGGGTTAAGTGGAAGAACGAGCTTTGTGCTCCTTTTGACAAGGAACCTTGGTCAACT CGGGTGGACGATAGGAATGTAGGATTATTCGAGGCGACCAAAGAGCTACGCGAGAGAATGAGGACGACTCGTGAA GACTGGCCATTCACGTTAGGATCAGCTCCGCTGACGGACATATGGCAAATGGGCTATTGTGACCTCCACGACTTG GAAAATGCTTTCCAGCCTGGTGACGTGAAAGACTTCGTCAAGAAAATTAAACTAGAGGACAATCGTATCGAGCTA CGCAGGAAGACCCTTGCCCAGAAGGAAGCTCCAGCTCAGGCCCAGGATGCCGGGAAAGAGGCAGCCGGTGATGAT GCAGTAATGAGCGTCGATGCTCCAGCAACACCCGCACCTACACCCGCACCCACACCTGCAACACTCGCATCCGCC CCCTCAAGCCAGGCATCTAGTGTTGCGATGGCATCTCCACTTCATCCATCTCTTCCACCGCGGCCCAATGCTCAG ACGCAACCCTTATCGAACACACCTGCACCAGCGCCAGCATCCAGCCCTGCACCTCCGGCGCCTGCTCTACCATCG CCCGTAAAGAAACTAGAAGCTTTAGATTCACAGATTGCCAAATTTGACGAAAATAAACAACGATGGGCTTGGCTA GCCCTCCGGACAGCCCGCGATCAGCATCTGCAGCACTTTGGAAAAATTGGCACGGGTGACGTAGGGCTTCTCGTG CAGGAAATTGAGAAAGAAAGGCAAGAGAGAGAGAAAGTTCAAAAGGCGGAGGAAACGGGCAGCACGATCGATGAA GGAAACCCTAAAACTCCGGCGTCTGAGCCGCTCATGCGAACAGACTCTCAGTCATCTGTAGTAACAGCTGGTGTA CCAAAGTCGGACCCAGATGTAAGGGCGGAGATGCAGTCTTGA
Transcript	>Agabi119p4|005660 ATGCTCCCTCTTCAACCGTTTCTCGACACCCTTCTCTCATCTCTCCCACCGCTTCCTATATCTCAAGCTCAGTAT AACTCCCTCGTAAAAAACACCCTTGACGACTCTCGCGGAAAATCCTCTCCTGACAATAGGAAGAATCAATGGGAA TATCTATTGAAAAATGAAGTGTTCAAGTTAGCGATGACTGAGGGAGTGGCTTTTAGGGAAGACAGTGCCAGGTAT TATGAACAAGTTAAAGTTCGACTAGACCTCGTCCTGACTTTCACTGAACAAGATGCCTGCGAGCAAACTTTCCCA TTCATTGTGTTACAAGATCTCCTAGAGACGCAAACCATCAATTCGTGTTCGCATATCTTTTCCTGGATCGAGGCT CGCTCCTCAAGGCTTACTGAAGGCATGGTGCCTCAGAAGGGAAAGGCTCTCATTCTCCTTCGTACGCTGAATGAT TTGCTCCGTCGTCTATCAAAATCAGGATCTACCACCGTTTTCTGTGGTCGGATTTTAACATTCCTAAGTGGTGTT TTCCCTCTGGGTGAGCGCAGCGGCGTCAACCTGCGGGGAGAATATGGTCCAACTTGGGAGGATGTATGGTATCCA AAACACGATGAGGATACAAATACGGAGATGACGGACTTCCGGGGAGAGTCTTCGCGGTCGGACGAAGTCCCCGAG GATAATGCAATGCAAGTTGACTCCAACAAAGAAACTAAAGCAACGCCGACGGGTCAGGCCAAAGGAGACAACAAA GAAGATTTTTACAATACATTTTGGCACCTTCAGTACCCATTTTCGAAACCTTCGATCTTCGCCAACAAAGAGGCT TTCCCTCAGTTCCAAGAAGCTATCGATAAGGTTTTGCCCGTCATCAAGGAAGCGACAGCAAAAGAAAGGGCTATG ATGGGAAGTCGAGTTGCGGCTGGTGTCGTTCTGACCAAGAGGAAACGAGAACCTGAGGCCGAGGAGTCGAATGTT AATGAGTATTTTTTCGCCAAATTTTTGACCTCTCCCGACCTTCTTGATCTCGAGATTGCCGACACGCATTTCCGT CGTCAATTCCTCTTCCAGTTGATGATCTTACTGCAACATCTTCTCACCTTTACCAAAGGTGCAAAGGCTGCATGG GCAACACAACGGAATAGGTCATTACAAATGGACTTCACCTTGGAGGCGGAAGATACACAATGGGTTCAGGATACG CTAAGCAAGTCCATGGAGGAGCTCAAACAAACTACTCCAAATGGCCGCGCATTTGCTGAGACAACTCAAACAATC TTAGAGCGCGAGAAGAATTGGGTTAAGTGGAAGAACGAGCTTTGTGCTCCTTTTGACAAGGAACCTTGGTCAACT CGGGTGGACGATAGGAATGTAGGATTATTCGAGGCGACCAAAGAGCTACGCGAGAGAATGAGGACGACTCGTGAA GACTGGCCATTCACGTTAGGATCAGCTCCGCTGACGGACATATGGCAAATGGGCTATTGTGACCTCCACGACTTG GAAAATGCTTTCCAGCCTGGTGACGTGAAAGACTTCGTCAAGAAAATTAAACTAGAGGACAATCGTATCGAGCTA CGCAGGAAGACCCTTGCCCAGAAGGAAGCTCCAGCTCAGGCCCAGGATGCCGGGAAAGAGGCAGCCGGTGATGAT GCAGTAATGAGCGTCGATGCTCCAGCAACACCCGCACCTACACCCGCACCCACACCTGCAACACTCGCATCCGCC CCCTCAAGCCAGGCATCTAGTGTTGCGATGGCATCTCCACTTCATCCATCTCTTCCACCGCGGCCCAATGCTCAG ACGCAACCCTTATCGAACACACCTGCACCAGCGCCAGCATCCAGCCCTGCACCTCCGGCGCCTGCTCTACCATCG CCCGTAAAGAAACTAGAAGCTTTAGATTCACAGATTGCCAAATTTGACGAAAATAAACAACGATGGGCTTGGCTA GCCCTCCGGACAGCCCGCGATCAGCATCTGCAGCACTTTGGAAAAATTGGCACGGGTGACGTAGGGCTTCTCGTG CAGGAAATTGAGAAAGAAAGGCAAGAGAGAGAGAAAGTTCAAAAGGCGGAGGAAACGGGCAGCACGATCGATGAA GGAAACCCTAAAACTCCGGCGTCTGAGCCGCTCATGCGAACAGACTCTCAGTCATCTGTAGTAACAGCTGGTGTA CCAAAGTCGGACCCAGATGTAAGGGCGGAGATGCAGTCTTGA
Gene	>Agabi119p4|005660 ATGCTCCCTCTTCAACCGTTTCTCGACACCCTTCTCTCATCTCTCCCACCGCTTCCTATATCTCAAGCTCAGTAT AACTCCCTCGTAAAAAACACCCTTGACGACTCTCGCGGAAAATCCTCTCCTGACAATAGGAAGAATCAATGGGAA TATCTATTGAAAAATGAAGTGTTCAAGTTAGCGGTGCGTGATATTCTGACACTGCGAGTTTTTAATCTAACTTCT CATAAGATGACTGAGGGAGTGGCTTTTAGGGAAGACAGTGCCAGGTATTATGAACAAGTTAAAGTTCGACTAGAC CTCGTCCTGACTTTCACTGAACAAGGTGAACTGCTTTCGCCACATACCACCGCGGTCCACCTAATCCTGAATACA GATGCCTGCGAGCAAACTTTCCCATTCATTGTGTTACAAGATCTCCTAGAGACGCAAACCATCAATTCGTGTTCG CATATCTTTTCCTGGATCGAGGCTCGCTCCTCAAGGCTTACTGAAGGCATGGTGCCTCAGAAGGGAAAGGCTCTC ATTCTCCTTCGTACGCTGAATGATTTGCTCCGTCGTCTATCAAAATCAGGATCTACCACCGTTTTCTGTGGTCGG ATTTTAACATTCCTAAGTGGTGTTTTCCCTCTGGGTGAGCGCAGCGGCGTCAACCTGCGGGGAGAATATGGTCCA ACTTGGGAGGATGTATGGTATCCAAAACACGATGAGGATACAAATACGGAGATGACGGACTTCCGGGGAGAGTCT TCGCGGTCGGACGAAGTCCCCGAGGATAATGCAATGCAAGTTGACTCCAACAAAGAAACTAAAGCAACGCCGACG GGTCAGGCCAAAGGAGACAACAAAGAAGGCCCGTTGTCCTCTATTTGATCTTTCGAATAACTAAATCGACTCCCT CCAGATTTTTACAATACATTTTGGCACCTTCAGTACCCATTTTCGAAACCTTCGATCTTCGCCAACAAAGAGGCT TTCCCTCAGTTCCAAGAAGCTATCGATAAGGTTTTGCCCGTCATCAAGGAAGCGACAGCAAAAGAAAGGGCTATG ATGGGAAGTCGAGTTGCGGCTGGTGTCGTTCTGACCAAGAGGAAACGAGAACCTGAGGCCGAGGAGTCGAATGTT AATGAGTATTTTTTCGCCAAATTTTTGACCTCTCCCGACCTTCTTGATCTCGAGGTACTCGTGCTTTCTTTTCCA TATTTCCTCTTTGACTCAATAGCATTTCATCAGATTGCCGACACGCATTTCCGTCGTCAATTCCTCTTCCAGTTG ATGATCTTACTGCAACATCTTCTCACCTTTACCAAAGGTGCAAAGGCTGCATGGGCAACACAACGGAATAGGTCA TTACAAATGGACTTCACCTTGGAGGCGGAAGATACACAATGGGTTCAGGATACGCTAAGCAAGTCCATGGAGGAG CTCAAACAAACTACTCCAAATGGCCGCGCATTTGCTGAGACAACTCAAACAATCTTAGAGCGCGAGAAGAATTGG GTTAAGTGGAAGAACGAGCTTTGTGCTCCTTTTGACAAGGAACCTTGGTCAACTCGGGTGGACGATAGGAATGTA GGATTATTCGAGGCGACCAAAGAGCTACGCGAGAGAATGAGGACGACTCGTGAAGACTGGCCATTCACGTTAGGA TCAGCTCCGCTGACGGACATATGGCAAATGGGCTATTGTGACCTCCACGACTTGGAAAATGCTTTCCAGTTGCGT GTCATATTTTTCAATCTGATATCCTCTTACTCTCTAACTCTAGGCCTGGTGACGTGAAAGACTTCGTCAAGAAAA TTAAACTAGAGGACAATCGTATCGAGCTACGCAGGAAGACCCTTGCCCAGAAGGAAGCTCCAGCTCAGGCCCAGG ATGCCGGGAAAGAGGCAGCCGGTGATGATGCAGTAATGAGCGTCGATGCTCCAGCAACACCCGCACCTACACCCG CACCCACACCTGCAACACTCGCATCCGCCCCCTCAAGCCAGGCATCTAGTGTTGCGATGGCATCTCCACTTCATC CATCTCTTCCACCGCGGCCCAATGCTCAGACGCAACCCTTATCGAACACACCTGCACCAGCGCCAGCATCCAGCC CTGCACCTCCGGCGCCTGCTCTACCATCGCCCGTAAAGAAACTAGAAGCTTTAGATTCACAGATTGCCAAATTTG ACGAAGTGAGTTTTTTTTCCGATGGTTAGGCCTTATCTTGATTACAGTCTAGAATAAACAACGATGGGCTTGGCT AGCCCTCCGGACAGCCCGCGATCAGCATCTGCAGCACTTTGGAAAAATTGGCACGGGTGACGTAGGGCTTCTCGT GCAGGAAATTGAGAAAGAAAGGCAAGAGAGAGAGAAAGTTCAAAAGGCGGAGGAAACGGGCAGCACGATCGATGA AGGAAACCCTAAAACTCCGGCGTCTGAGCCGCTCATGCGAACAGACTCTCAGTCATCTGTAGTAACAGCTGGTGT ACCAAAGTCGGACCCAGATGTAAGGGCGGAGATGCAGTCTTGA