© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|004910 |
| Gene name | |
| Location | scaffold_01a:1253388..1253894 |
| Strand | + |
| Gene length (bp) | 506 |
| Transcript length (bp) | 336 |
| Coding sequence length (bp) | 336 |
| Protein length (aa) | 112 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02970 | TBCA | Tubulin binding cofactor A | 6.0E-23 | 8 | 105 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O75347|TBCA_HUMAN | Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3 | 9 | 106 | 3.0E-07 |
| sp|P80585|TBCA_CHICK | Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2 | 9 | 80 | 6.0E-07 |
| sp|P48427|TBCA_BOVIN | Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3 | 9 | 106 | 6.0E-07 |
| sp|P48428|TBCA_MOUSE | Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3 | 9 | 106 | 1.0E-06 |
| sp|Q6PEC1|TBCA_RAT | Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1 | 9 | 106 | 2.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O75347|TBCA_HUMAN | Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3 | 9 | 106 | 3.0E-07 |
| sp|P80585|TBCA_CHICK | Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2 | 9 | 80 | 6.0E-07 |
| sp|P48427|TBCA_BOVIN | Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3 | 9 | 106 | 6.0E-07 |
| sp|P48428|TBCA_MOUSE | Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3 | 9 | 106 | 1.0E-06 |
| sp|Q6PEC1|TBCA_RAT | Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1 | 9 | 106 | 2.0E-06 |
| sp|P80584|TBCA_RABIT | Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1 SV=2 | 9 | 106 | 2.0E-06 |
| sp|O04350|TBCA_ARATH | Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2 | 4 | 90 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0048487 | beta-tubulin binding | Yes |
| GO:0007023 | post-chaperonin tubulin folding pathway | Yes |
| GO:0007021 | tubulin complex assembly | Yes |
| GO:0005515 | protein binding | No |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0016043 | cellular component organization | No |
| GO:0008150 | biological_process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0006457 | protein folding | No |
| GO:0005488 | binding | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0015631 | tubulin binding | No |
| GO:0065003 | protein-containing complex assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|004910 MAELATIQKQLKIKAGVVQRYNKEMTLYRKEVVDLGGKLTRLVADGTEEWDIKNMKRMIEESEKMILDTETKLDK AKGELKDLVKRVEGTPGVAASDEFVKAQGIVTEDTA* |
| Coding | >Agabi119p4|004910 ATGGCCGAGCTCGCTACAATTCAGAAACAGCTAAAGATCAAGGCTGGTGTTGTCCAACGGTATAACAAGGAGATG ACGCTCTATCGCAAAGAAGTTGTAGATTTGGGAGGGAAATTGACTCGACTTGTCGCTGATGGTACAGAAGAATGG GATATCAAGAATATGAAACGGATGATTGAAGAGTCGGAGAAAATGATCCTCGACACAGAAACTAAACTTGATAAG GCGAAGGGAGAATTGAAGGACCTCGTGAAACGAGTGGAGGGTACACCAGGAGTGGCAGCAAGCGATGAATTTGTT AAGGCACAAGGCATTGTTACCGAAGATACGGCATAG |
| Transcript | >Agabi119p4|004910 ATGGCCGAGCTCGCTACAATTCAGAAACAGCTAAAGATCAAGGCTGGTGTTGTCCAACGGTATAACAAGGAGATG ACGCTCTATCGCAAAGAAGTTGTAGATTTGGGAGGGAAATTGACTCGACTTGTCGCTGATGGTACAGAAGAATGG GATATCAAGAATATGAAACGGATGATTGAAGAGTCGGAGAAAATGATCCTCGACACAGAAACTAAACTTGATAAG GCGAAGGGAGAATTGAAGGACCTCGTGAAACGAGTGGAGGGTACACCAGGAGTGGCAGCAAGCGATGAATTTGTT AAGGCACAAGGCATTGTTACCGAAGATACGGCATAG |
| Gene | >Agabi119p4|004910 ATGGCCGAGCTCGCTACAATTCAGAAACAGCTAAAGATCAAGGCTGGTGTTGTCCAACGGTGAGGGGACATACCA CGATTAGTCGTATATGCGAAGATTGACACTTGGGTGAAGGTATAACAAGGAGATGACGCTCTATCGCAAAGAAGT TGTAGATTTGGGAGGGAAATTGACTCGACTTGTCGCTGATGGTACAGAAGAATGGGATATCAAGAATATGGTATA TCTTTACGATTTGGCGTTTTATTCTGCTACTCTGATGACGGTTACAAACGTAGAAACGGATGATTGAAGAGTCGG AGAAAATGATCCTCGACACAGAAACTAAACTTGATAAGGCGAAGGGAGAATTGAAGGACCTCGTGGTCAGTTTTC CTTCGTCTCGACACAAATTCACTCTGACCAGATATCTCGTACGACAGAAACGAGTGGAGGGTACACCAGGAGTGG CAGCAAGCGATGAATTTGTTAAGGCACAAGGCATTGTTACCGAAGATACGGCATAG |