Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	Agabi119p4|003600
Gene name
Location	scaffold_01a:942192..944220
Strand	-
Gene length (bp)	2028
Transcript length (bp)	1398
Coding sequence length (bp)	1398
Protein length (aa)	466

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06068	TIP49	TIP49 P-loop domain	3.4E-153	29	383
PF17856	TIP49_C	TIP49 AAA-lid domain	3.6E-19	389	454
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	1.8E-07	81	134
PF05496	RuvB_N	Holliday junction DNA helicase RuvB P-loop domain	5.4E-07	53	106

Swissprot hits

GO

GO Term	Description	Terminal node
GO:0005524	ATP binding	Yes
GO:0009378	four-way junction helicase activity	Yes
GO:0006281	DNA repair	Yes
GO:0006310	DNA recombination	Yes
GO:0016887	ATP hydrolysis activity	Yes
GO:0008094	ATP-dependent activity, acting on DNA	No
GO:0006259	DNA metabolic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0044238	primary metabolic process	No
GO:0006950	response to stress	No
GO:1901265	nucleoside phosphate binding	No
GO:0005488	binding	No
GO:0036094	small molecule binding	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0016787	hydrolase activity	No
GO:0006807	nitrogen compound metabolic process	No
GO:0051716	cellular response to stimulus	No
GO:0090304	nucleic acid metabolic process	No
GO:0050896	response to stimulus	No
GO:0046483	heterocycle metabolic process	No
GO:0000166	nucleotide binding	No
GO:0008152	metabolic process	No
GO:0097367	carbohydrate derivative binding	No
GO:0003674	molecular_function	No
GO:0016462	pyrophosphatase activity	No
GO:0016817	hydrolase activity, acting on acid anhydrides	No
GO:0003678	DNA helicase activity	No
GO:0006974	cellular response to DNA damage stimulus	No
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	No
GO:0030554	adenyl nucleotide binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0032553	ribonucleotide binding	No
GO:0008150	biological_process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0017076	purine nucleotide binding	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:1901363	heterocyclic compound binding	No
GO:0043167	ion binding	No
GO:0004386	helicase activity	No
GO:0032555	purine ribonucleotide binding	No
GO:0044237	cellular metabolic process	No
GO:0003824	catalytic activity	No
GO:0071704	organic substance metabolic process	No
GO:0043168	anion binding	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0140097	catalytic activity, acting on DNA	No
GO:0009987	cellular process	No
GO:0140657	ATP-dependent activity	No
GO:0097159	organic cyclic compound binding	No
GO:0017111	nucleoside-triphosphatase activity	No
GO:0033554	cellular response to stress	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 14	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4|003600 MKPTASASAAPAHNAPLPPTTSAAARSSRIAPHSHIKGLGLNNEGLASSGAAGFVGQTEAREACGVVVELVKLRK FSGRALLLVGAPGTGKTALALAVAQDLGTKVPFCPMVGSEVYSSEVKKTEVLAEAFRRAIGLRIKETKTVFEGEV TELTPVESENPLSGYGKTVSRVIVGLKTVRGTKQCIMDPSVYEAILKEKIIVGDVIYIEQNGGAVKRVGRSDAYA SSYDLESETYVPLPKGDVFKKKELVQDVTLGDLDAANARPQGGQDIMSVMGSLVKSGRTEVTEKLRREVNRVVKG YVDQGVAEVVPGVVFIDEVHMLDIECFTYLNALLESPMAPTVILATNRGNALVRGTTDIVSPHGVPVDLLDRCLI VKTSTYTRDEVGKVVQIRAQVEGLKLGSGVQEKLAEEGERSSLRYALQLLAPASIAATLGGRSEIELEDIHEMSE LFLDAKTRLILRSRL*
Coding	>Agabi119p4|003600 ATGAAACCAACAGCATCTGCCTCAGCCGCGCCTGCGCACAATGCTCCCTTACCACCCACTACGTCGGCCGCAGCA CGTTCCTCACGCATCGCTCCTCACTCCCATATCAAAGGTTTAGGTCTCAACAACGAAGGTCTGGCATCTTCTGGT GCAGCCGGCTTCGTTGGTCAGACTGAGGCTCGTGAGGCCTGTGGTGTTGTCGTTGAGCTCGTAAAATTGCGCAAA TTCTCCGGACGAGCGTTGTTGCTTGTTGGTGCCCCAGGAACAGGAAAAACAGCTCTTGCCCTGGCTGTCGCTCAA GATCTGGGTACAAAAGTACCGTTCTGTCCCATGGTCGGGTCGGAAGTGTACAGCTCAGAAGTCAAAAAAACTGAA GTGCTCGCCGAAGCATTTCGACGTGCCATTGGTCTGCGGATAAAGGAGACAAAAACTGTGTTTGAAGGGGAAGTC ACAGAATTAACTCCAGTCGAATCCGAAAATCCACTCAGCGGGTATGGCAAAACCGTCTCTCGCGTTATCGTGGGG CTCAAAACCGTCCGGGGGACCAAACAATGCATCATGGATCCATCTGTGTACGAGGCGATCCTCAAAGAAAAAATA ATTGTCGGCGATGTCATTTACATCGAACAAAACGGAGGTGCCGTCAAGCGAGTGGGTCGTTCCGACGCGTATGCA TCATCTTATGACCTCGAGTCTGAAACGTACGTGCCACTACCAAAAGGAGATGTTTTCAAGAAGAAAGAGCTGGTG CAAGACGTGACGTTGGGTGACTTGGATGCGGCGAACGCCCGACCCCAGGGTGGCCAGGACATCATGAGCGTGATG GGCAGCCTAGTGAAGAGCGGGAGAACGGAAGTGACTGAAAAGCTGCGGAGAGAGGTGAACAGAGTGGTAAAAGGC TATGTCGATCAGGGTGTCGCAGAGGTCGTTCCAGGCGTTGTTTTTATAGACGAGGTCCACATGCTTGACATTGAA TGCTTCACGTATCTTAATGCTCTTCTAGAATCGCCCATGGCGCCCACCGTCATTCTGGCCACTAACCGAGGAAAT GCACTAGTGCGAGGTACGACTGACATCGTATCTCCACACGGTGTTCCGGTAGATCTACTTGACCGATGTCTTATC GTCAAAACATCAACATACACACGCGATGAGGTCGGCAAGGTTGTTCAGATACGTGCTCAGGTGGAAGGACTCAAG CTTGGTTCTGGTGTACAAGAAAAACTCGCGGAGGAGGGAGAACGAAGCTCGCTGAGATACGCTCTTCAATTACTG GCTCCAGCTTCGATTGCAGCCACACTAGGAGGCCGGTCGGAGATCGAGCTCGAGGATATCCATGAAATGAGCGAG CTCTTTTTGGACGCAAAAACACGGTTGATTCTCAGGTCGCGGTTGTGA
Transcript	>Agabi119p4|003600 ATGAAACCAACAGCATCTGCCTCAGCCGCGCCTGCGCACAATGCTCCCTTACCACCCACTACGTCGGCCGCAGCA CGTTCCTCACGCATCGCTCCTCACTCCCATATCAAAGGTTTAGGTCTCAACAACGAAGGTCTGGCATCTTCTGGT GCAGCCGGCTTCGTTGGTCAGACTGAGGCTCGTGAGGCCTGTGGTGTTGTCGTTGAGCTCGTAAAATTGCGCAAA TTCTCCGGACGAGCGTTGTTGCTTGTTGGTGCCCCAGGAACAGGAAAAACAGCTCTTGCCCTGGCTGTCGCTCAA GATCTGGGTACAAAAGTACCGTTCTGTCCCATGGTCGGGTCGGAAGTGTACAGCTCAGAAGTCAAAAAAACTGAA GTGCTCGCCGAAGCATTTCGACGTGCCATTGGTCTGCGGATAAAGGAGACAAAAACTGTGTTTGAAGGGGAAGTC ACAGAATTAACTCCAGTCGAATCCGAAAATCCACTCAGCGGGTATGGCAAAACCGTCTCTCGCGTTATCGTGGGG CTCAAAACCGTCCGGGGGACCAAACAATGCATCATGGATCCATCTGTGTACGAGGCGATCCTCAAAGAAAAAATA ATTGTCGGCGATGTCATTTACATCGAACAAAACGGAGGTGCCGTCAAGCGAGTGGGTCGTTCCGACGCGTATGCA TCATCTTATGACCTCGAGTCTGAAACGTACGTGCCACTACCAAAAGGAGATGTTTTCAAGAAGAAAGAGCTGGTG CAAGACGTGACGTTGGGTGACTTGGATGCGGCGAACGCCCGACCCCAGGGTGGCCAGGACATCATGAGCGTGATG GGCAGCCTAGTGAAGAGCGGGAGAACGGAAGTGACTGAAAAGCTGCGGAGAGAGGTGAACAGAGTGGTAAAAGGC TATGTCGATCAGGGTGTCGCAGAGGTCGTTCCAGGCGTTGTTTTTATAGACGAGGTCCACATGCTTGACATTGAA TGCTTCACGTATCTTAATGCTCTTCTAGAATCGCCCATGGCGCCCACCGTCATTCTGGCCACTAACCGAGGAAAT GCACTAGTGCGAGGTACGACTGACATCGTATCTCCACACGGTGTTCCGGTAGATCTACTTGACCGATGTCTTATC GTCAAAACATCAACATACACACGCGATGAGGTCGGCAAGGTTGTTCAGATACGTGCTCAGGTGGAAGGACTCAAG CTTGGTTCTGGTGTACAAGAAAAACTCGCGGAGGAGGGAGAACGAAGCTCGCTGAGATACGCTCTTCAATTACTG GCTCCAGCTTCGATTGCAGCCACACTAGGAGGCCGGTCGGAGATCGAGCTCGAGGATATCCATGAAATGAGCGAG CTCTTTTTGGACGCAAAAACACGGTTGATTCTCAGGTCGCGGTTGTGA
Gene	>Agabi119p4|003600 ATGAAACCAACAGCATCTGCCTCAGCCGCGCCTGCGCACAATGCTCCCTTACCACCCACTACGTCGGCCGCAGCA CGTTCCTCACGCATCGCTCCTCACTCCCATATCAAAGGTTTAGGTCTCAACAACGAAGGTCTGGCATCTTCTGGT GCAGCCGGCTTCGTTGGTCAGACTGAGGCTCGTGAGGTACCATTGAGATCTGCGTCACGGTCGAATCATGCTCAT AAATCACATCAATCGGTTGTCAATTTTAGGCCTGTGGTGTTGTCGTTGAGCTCGTAAAATTGCGCAAATTCTCCG GACGAGCGTTGTTGCTTGTTGGTGCCCCAGGAACAGGAAAAACAGCTCTTGCCCTGGCTGTCGCTCAAGATCTGG GTACAAAAGTACCGTTCTGTCCCATGGTCGGGTCGGAAGTGTACAGCTCAGAAGTCAAAAAAACTGAAGTGCTCG CCGAAGCATTTCGACGTGCCATTGGTGAGTTCAGGTGCCTGTACCATTTTTTTTGCTAGTGTCGAATTTCTATTT GCATTTTTCATTGTTGATCTCTCAATTCTTAGGTCTGCGGATAAAGGAGACAAAAACTGTGTTTGAAGGGGAAGT CACAGAATTAACTCCAGTCGAATCCGAAAATCCACTCAGCGGGTATGGCAAAACCGTCTCTCGCGTTATCGTGGG GCTCAAAACCGTCCGGGGGACCAAACAATGCATCATGGATCCATCTGTGTACGAGGCGATCCTCAAAGAAAAAAT AATTGTCGGCGATGTCATTTACATCGAACAAAACGGAGGTGCCGTCAAGGTGCGTAAAAATTAGAGTAGCCTCTG GTGCTGCTCCTCATAGTGTTACAGCGAGTGGGTCGTTCCGACGCGTATGCATCATCTTATGACCTCGAGTCTGAA ACGTACGTGCCACTACCAAAAGGAGATGTTTTCAAGAAGAAAGAGCTGGTGCAAGACGTGACGTTGGGTGACTTG GATGCGGCGAACGCCCGACCCCAGGGTGGCCAGGACATCATGAGCGTGATGGGCAGCCTAGTGAAGAGCGGGAGA ACGGAAGTGACTGAAAAGCTGCGGAGAGAGGTGAACAGAGTGGTAAAAGGCTATGTCGATCAGGGTGTCGCAGAG GTCGTTCCAGGCGTTGTTTTTATAGACGAGGTAGGTTGTTTGCCTGTTTCGATATACTCAAATCGTCAAACTCAC AAAAGGGATAAAGGTCCACATGCTTGACATTGAATGCTTCACGTATCTTAATGCTCTTCTAGAATCGCCCATGGC GCCCACCGTCATTCTGGCCACTAACCGAGGAAATGCACTAGTGCGAGGTACGACTGACATCGTATCTCCACACGG TGTTCCGGTAGATCTACTTGACCGGTATAAATCGAGTTCATTGATAACGAAGGTCCTCATGTTGATTCCTTTCAC AGATGTCTTATCGTCAAAACATCAACATACACACGCGATGAGGTCGGCAAGGTTGTTCAGATACGTGCTCAGGTG GAAGGACTCAAGCTTGGTTCTGGTGTACAAGAAAAACTCGCGGAGGAGGGAGAACGAAGCTCGCTGAGGTAGGAA ACCTATATCAGCCAGGCCTTTAAGCTTTCCCGAGACTGATTTACAAAACCCAGATACGCTCTTCAATTACTGGCT CCAGCTTCGATTGCAGCCACACTAGGAGGCCGGTCGGAGATCGAGCTCGAGGATATCCATGAAATGAGCGAGCTC TTTTTGGACGCAAAAACGTCCGCACAAAACATTGGAGAAGGGGGTTTTACAGGTGGAGAATCACTGTGAACGAAG GCTTTCTCGTAAAATATAGACGGTTGGTGGTCTGTGCGCTCATCAGATATTTTTCGTTGATGCATTACCACAGGT TGATGTATATAGAGCCCCCACAACTAATCTACATCCGATTTTGATATCCTTGGCCGTGGGTCCTGTCAAGTTTCT CAGTCTCAGGTCGCGGTATGTATATTTTACAGGTTGATTCATTTGCAGCGGCTATCTGAGAGAGGATAAAGGTTG TGA