Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|003090
Gene name
Location	scaffold_01a:833561..834967
Strand	+
Gene length (bp)	1406
Transcript length (bp)	1080
Coding sequence length (bp)	1080
Protein length (aa)	360

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05739	SNARE	SNARE domain	1.3E-11	304	356
PF11416	Syntaxin-5_N	Syntaxin-5 N-terminal, Sly1p-binding domain	1.4E-06	23	40

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13644\|SED5_SCHPO	Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1	24	359	8.0E-85
sp\|Q08851\|STX5_RAT	Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2	5	343	7.0E-74
sp\|Q8K1E0\|STX5_MOUSE	Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3	15	343	3.0E-73
sp\|Q08DB5\|STX5_BOVIN	Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1	23	343	6.0E-72
sp\|Q13190\|STX5_HUMAN	Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2	23	343	9.0E-72

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13644\|SED5_SCHPO	Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1	24	359	8.0E-85
sp\|Q08851\|STX5_RAT	Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2	5	343	7.0E-74
sp\|Q8K1E0\|STX5_MOUSE	Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3	15	343	3.0E-73
sp\|Q08DB5\|STX5_BOVIN	Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1	23	343	6.0E-72
sp\|Q13190\|STX5_HUMAN	Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2	23	343	9.0E-72
sp\|Q24509\|STX5_DROME	Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2	24	344	3.0E-64
sp\|Q9LK09\|SYP32_ARATH	Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1	27	357	4.0E-52
sp\|Q20797\|STX5_CAEEL	Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1	22	343	2.0E-49
sp\|Q01590\|SED5_YEAST	Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1	24	359	5.0E-46
sp\|Q9FFK1\|SYP31_ARATH	Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1	60	357	1.0E-40

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 13	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	339	358	19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|003090 MQGTAPPSAPYLYHIPSLYNTLSMPIQDRTNEFRACVDSIHHRSVSRGVEQKQRLLQKDRSSSKSEFSRLASAIG KDINNTTLKLNKLAQLAKRKTLFDDRPVEISELTYIIKQDIAHLNKQIASLQAYVKQRNAGNTSSVENKQVEEHT NNVVMLLQSKLANTSVTFKDVLEVRTQNMKESRTRTEQFMYSATSAATQPPSNSVLYNSSRNDPMGDGTANSFDF KGKGRATPKNDELSLDLNAVEGGSANGHADGAFMQMQLVEQQDTYIQQRSTAIESIETTIAELGQIFTQLANMVA EQRETVQRIDENVLDIESNITSAHGELSKYLAGMMSNRWLMLKMFGVLIVFFLIFILVS*
Coding	>Agabi119p4\|003090 ATGCAGGGCACCGCTCCTCCTTCTGCTCCATATCTATATCATATTCCCTCTCTCTACAATACCCTTAGTATGCCT ATTCAAGACCGCACAAATGAATTTAGAGCATGTGTAGACTCTATTCATCACCGCTCTGTCTCGCGTGGCGTAGAA CAAAAGCAGCGACTTCTGCAGAAGGACAGATCCTCCTCGAAGAGCGAATTTTCTCGTTTGGCTTCCGCGATTGGA AAAGACATCAATAATACCACTCTGAAACTCAACAAACTTGCTCAGCTTGCAAAACGAAAAACCTTGTTCGACGAT CGGCCTGTAGAAATTAGTGAATTAACATACATCATAAAGCAAGATATTGCCCACCTAAACAAACAAATTGCGTCT CTGCAGGCATATGTCAAGCAGCGCAATGCCGGCAATACTTCGTCGGTAGAGAACAAACAAGTTGAAGAGCATACG AATAATGTCGTCATGCTACTGCAGAGCAAGCTTGCAAACACCAGCGTAACATTCAAGGACGTGCTAGAAGTACGG ACACAAAACATGAAGGAATCGAGAACACGGACAGAACAATTTATGTATAGCGCCACATCGGCAGCTACACAACCA CCCTCTAATTCAGTATTGTACAATTCTTCTAGAAATGACCCAATGGGCGACGGTACCGCCAATAGTTTCGATTTC AAGGGTAAAGGCCGGGCCACACCCAAAAATGACGAACTATCTCTCGATTTGAATGCGGTGGAGGGGGGGAGCGCC AACGGGCATGCAGATGGTGCATTCATGCAGATGCAGCTAGTTGAACAACAGGATACATACATTCAACAACGCTCG ACCGCTATTGAATCTATTGAAACCACCATTGCCGAATTGGGCCAAATTTTCACTCAGCTTGCTAACATGGTAGCT GAACAACGAGAAACAGTCCAGCGAATCGACGAAAACGTCCTTGATATTGAGAGTAACATAACCTCTGCCCATGGA GAGCTTTCGAAATATCTGGCAGGTATGATGAGTAACCGATGGCTCATGTTAAAAATGTTCGGCGTCCTCATTGTC TTCTTCCTCATCTTCATTTTGGTTTCATAA
Transcript	>Agabi119p4\|003090 ATGCAGGGCACCGCTCCTCCTTCTGCTCCATATCTATATCATATTCCCTCTCTCTACAATACCCTTAGTATGCCT ATTCAAGACCGCACAAATGAATTTAGAGCATGTGTAGACTCTATTCATCACCGCTCTGTCTCGCGTGGCGTAGAA CAAAAGCAGCGACTTCTGCAGAAGGACAGATCCTCCTCGAAGAGCGAATTTTCTCGTTTGGCTTCCGCGATTGGA AAAGACATCAATAATACCACTCTGAAACTCAACAAACTTGCTCAGCTTGCAAAACGAAAAACCTTGTTCGACGAT CGGCCTGTAGAAATTAGTGAATTAACATACATCATAAAGCAAGATATTGCCCACCTAAACAAACAAATTGCGTCT CTGCAGGCATATGTCAAGCAGCGCAATGCCGGCAATACTTCGTCGGTAGAGAACAAACAAGTTGAAGAGCATACG AATAATGTCGTCATGCTACTGCAGAGCAAGCTTGCAAACACCAGCGTAACATTCAAGGACGTGCTAGAAGTACGG ACACAAAACATGAAGGAATCGAGAACACGGACAGAACAATTTATGTATAGCGCCACATCGGCAGCTACACAACCA CCCTCTAATTCAGTATTGTACAATTCTTCTAGAAATGACCCAATGGGCGACGGTACCGCCAATAGTTTCGATTTC AAGGGTAAAGGCCGGGCCACACCCAAAAATGACGAACTATCTCTCGATTTGAATGCGGTGGAGGGGGGGAGCGCC AACGGGCATGCAGATGGTGCATTCATGCAGATGCAGCTAGTTGAACAACAGGATACATACATTCAACAACGCTCG ACCGCTATTGAATCTATTGAAACCACCATTGCCGAATTGGGCCAAATTTTCACTCAGCTTGCTAACATGGTAGCT GAACAACGAGAAACAGTCCAGCGAATCGACGAAAACGTCCTTGATATTGAGAGTAACATAACCTCTGCCCATGGA GAGCTTTCGAAATATCTGGCAGGTATGATGAGTAACCGATGGCTCATGTTAAAAATGTTCGGCGTCCTCATTGTC TTCTTCCTCATCTTCATTTTGGTTTCATAA
Gene	>Agabi119p4\|003090 ATGCAGGGCACCGCTCCTCCTTCTGCTCCATATCTATATCATATTCCCTCTCTCTACAATACCCTTAGTATGCCT ATTCAAGACCGCACAAATGAATTTAGAGCATGTGTAGACTCTATTCATCACCGCTCTGTCTCGCGTGGCGTAGAA CAAAAGCAGCGACTTCTGCAGAAGGACAGATCCTCCTCGAAGAGCGAATTTTCTCGTTTGGCTTCCGCGATTGGA AAAGACATCAATAATACCACTCTGAAACTCAACAAACTTGCTCAGCGTACGCTTCTGGAGCTTCTGGCCGCATCC GCAGGTTCACTCACATTTCGCTCCCTATAGTTGCAAAACGAAAAACCTTGTTCGACGATCGGCCTGTAGAAATTA GTGTATGTCCCGCCACGCATGAAAATCGTTCCGGTGATATGGAAGACGTCCCCACAGGAATTAACATACATCATA AAGCAAGATATTGCCCACCTAAACAAACAAATTGCGTCTCTGCAGGCATATGTCAAGCAGCGCAATGCCGGCAAT ACTTCGTCGGTAGAGAACAAACAAGTTGAAGAGCATACGAATAATGTCGTCATGCTACTGCAGAGCAAGCTTGCA AACACCAGCGTAACATTCAAGGACGTGCTAGAAGTACGGACACAAGTGCGTTGCATGTTTGCTAGTATCTCTGGT TTTTTTCCTTCTAATGCGACATACCCTAGAACATGAAGGAATCGAGAACACGGACAGAACAATTTATGTATAGCG CCACATCGGCAGCTACACAACCACCCTCTAGTAGGCACCCCTTTTCACCCAGGTTGGAAAATGCTCATATATTCC CAGATTCAGTATTGTACAATTCTTCTAGAAATGACCCAATGGGCGACGGTACCGCCAATAGTTTCGATTTCAAGG GTAAAGGCCGGGCCACACCCAAAAATGACGAACTATCTCTCGATTTGAATGCGGTGGAGGGGGGGAGCGCCAACG GGCATGCAGATGGTGCATTCATGCAGATGCAGCTAGTTGAACAACAGGTATGCTTCTCTCCTCGAGACACTTCCG TCCTGACGGTGTTCTTGGCTACAGGATACATACATTCAACAACGCTCGACCGCTATTGAATCTATTGAAACCACC ATTGCCGAATTGGGCCAAATTTTCACTCAGCTTGCTAACATGGTAGCTGAACAACGAGAAACAGTCCAGCGAATC GACGAAAACGTCCTTGATATTGAGAGTAACATAACCTCTGCCCATGGAGAGCTTTCGAAATATCTGGCAGGTATG ATGAGTAACCGATGGCTCATGTTAAAAATGTTCGGCGTCCTCATTGTCTTCGTAAGTTTCTCATCGTCTTGTAAT CCAGGCGTGAATCTAATATGCTTCTTCAGTTCCTCATCTTCATTTTGGTTTCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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