Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF14223
Short nameRetrotran_gag_2
Long namegag-polypeptide of LTR copia-type
Proteins with at least one of this domain58
Total domain count58
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Agabi119p4|556250 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.8E-11 95 220
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.8E-12 514 584
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.7E-49 971 1211
Agabi119p4|564700 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 39 165
Agabi119p4|566750 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.0E-12 62 201
Agabi119p4|570700 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.2E-08 78 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.4E-08 1009 1058
PF00665 rve Integrase core domain 2.8E-13 1072 1169
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-65 1592 1823
Agabi119p4|577300 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.7E-11 77 180
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.3E-13 470 540
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 7.8E-35 905 1046
Agabi119p4|581650 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.4E-11 63 178
Agabi119p4|584600 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-08 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-69 1167 1404
Agabi119p4|592850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.6E-07 78 193
Agabi119p4|593700 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.5E-07 78 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.6E-08 1008 1058
PF00665 rve Integrase core domain 2.6E-13 1072 1169
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-65 1592 1823
Agabi119p4|595950 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.9E-12 94 216
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.2E-13 459 529
Agabi119p4|598850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.2E-08 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.2E-67 1167 1404
Agabi119p4|599750 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.2E-07 92 213
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.9E-13 512 585
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.4E-48 976 1218
Agabi119p4|605300 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-08 81 188
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.5E-08 1008 1058
PF00665 rve Integrase core domain 2.5E-13 1072 1169
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-65 1592 1823
Agabi119p4|606100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-12 38 162
Agabi119p4|613400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 96 209
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.8E-07 475 519
PF00665 rve Integrase core domain 1.9E-13 534 630
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.6E-67 910 1155
Agabi119p4|617150 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-06 85 195
PF14529 Exo_endo_phos_2 Endonuclease-reverse transcriptase 6.5E-07 1083 1173
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-31 1436 1697
Agabi119p4|619850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.2E-08 78 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.5E-08 1008 1058
PF00665 rve Integrase core domain 2.5E-13 1072 1169
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 6.1E-65 1592 1823
Agabi119p4|620600 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.3E-11 95 221
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-12 463 536
Agabi119p4|620650 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-08 81 188
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.0E-08 1008 1058
PF00665 rve Integrase core domain 7.1E-14 1072 1169
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.5E-65 1592 1823
Agabi119p4|620800 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-08 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-69 1167 1404
Agabi119p4|627050 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-07 1 109
Agabi119p4|637100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.8E-13 36 162
Agabi119p4|639550 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-09 88 207
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.2E-13 513 583
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.1E-51 967 1207
Agabi119p4|642500 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.7E-08 78 197
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.6E-09 1006 1056
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-53 1544 1756
Agabi119p4|643800 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-08 62 144
Agabi119p4|643850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.2E-11 42 180
Agabi119p4|644000 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-08 44 151
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.7E-08 971 1021
PF00665 rve Integrase core domain 2.4E-13 1035 1132
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.5E-65 1555 1786
Agabi119p4|644400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.7E-10 45 180
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.7E-10 410 477
Agabi119p4|656400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.6E-10 95 222
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.4E-13 514 588
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.9E-52 989 1229
Agabi119p4|659600 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.1E-11 94 218
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.4E-12 463 535
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.8E-48 915 1155
Agabi119p4|669400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.8E-10 93 219
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-10 491 564
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 7.5E-52 956 1197
Agabi119p4|671650 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.2E-12 36 162
PF13976 gag_pre-integrs GAG-pre-integrase domain 6.9E-08 721 764
PF00665 rve Integrase core domain 2.0E-10 780 876
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.9E-64 1279 1510
Agabi119p4|676100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 7.3E-12 62 201
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.0E-10 431 498
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-46 937 1109
Agabi119p4|683400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.8E-11 69 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.3E-08 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-69 1167 1404
Agabi119p4|683800 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.9E-08 78 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.4E-08 963 1013
PF00665 rve Integrase core domain 5.0E-13 1027 1124
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.4E-65 1528 1759
Agabi119p4|685550 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.2E-12 71 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.2E-08 589 638
PF00665 rve Integrase core domain 7.3E-14 651 749
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.7E-69 1166 1403
Agabi119p4|686450 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.4E-11 11 136
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.4E-11 433 503
Agabi119p4|698050 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.0E-09 91 215
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.6E-09 499 572
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-50 970 1211
Agabi119p4|707800 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-08 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-69 1167 1404
Agabi119p4|707850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.6E-13 96 209
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.9E-07 475 519
PF00665 rve Integrase core domain 5.6E-12 534 630
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-67 909 1154
Agabi119p4|708100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.2E-08 78 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.5E-08 1009 1059
PF00665 rve Integrase core domain 2.5E-13 1073 1170
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-65 1593 1824
Agabi119p4|708450 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.8E-07 7 101
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.4E-08 917 967
PF00665 rve Integrase core domain 2.4E-13 981 1078
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-65 1501 1732
Agabi119p4|710650 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 7.6E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.3E-08 590 639
PF00665 rve Integrase core domain 6.5E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-68 1167 1404
Agabi119p4|711450 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-08 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-69 1167 1404
Agabi119p4|718100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-09 14 128
Agabi119p4|719150 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.6E-06 78 200
Agabi119p4|719850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.0E-11 62 201
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.4E-09 431 498
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-64 933 1176
Agabi119p4|719950 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.0E-11 62 201
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.4E-09 431 498
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-64 933 1176
Agabi119p4|720600 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-13 103 221
Agabi119p4|734850 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.4E-07 114 224
Agabi119p4|742800 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.6E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.2E-08 590 639
PF00665 rve Integrase core domain 7.3E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-52 1186 1383
Agabi119p4|758100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.9E-14 105 237
PF00098 zf-CCHC Zinc knuckle 6.5E-04 294 310
Agabi119p4|758250 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-07 590 639
PF00665 rve Integrase core domain 7.4E-14 652 750
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.8E-69 1167 1404
Agabi119p4|762200 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.2E-08 78 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.5E-08 1009 1059
PF00665 rve Integrase core domain 6.6E-13 1073 1170
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.0E-65 1593 1824
Agabi119p4|768000 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.1E-08 44 151
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.9E-08 972 1022
PF00665 rve Integrase core domain 1.3E-13 1036 1133
Agabi119p4|770150 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.3E-10 2 113
Agabi119p4|770800 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.1E-12 36 162
Agabi119p4|773750 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.3E-09 95 222
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.6E-13 514 588
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.1E-52 989 1229
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.5E-24 2025 2186
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.5E-30 2249 2349
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.8E-33 2275 2380
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.4E-19 2494 2552
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-12 2866 2915

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