Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00385
Short nameChromo
Long nameChromo (CHRromatin Organisation MOdifier) domain
Proteins with at least one of this domain96
Total domain count96
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Agabi119p4|008500 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.1E-12 25 82
Agabi119p4|037380 PF18723 aGPT-Pplase1 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 2.5E-109 133 418
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.0E-11 466 516
Agabi119p4|042800 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-15 298 349
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-07 403 550
PF00176 SNF2-rel_dom SNF2-related domain 5.2E-62 405 669
PF00271 Helicase_C Helicase conserved C-terminal domain 8.8E-19 696 806
PF18196 Cdh1_DBD_1 Chromodomain helicase DNA-binding domain 1 1.7E-08 1017 1095
PF13907 DUF4208 Domain of unknown function (DUF4208) 9.9E-24 1296 1390
Agabi119p4|056630 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 7.0E-09 7 66
Agabi119p4|095390 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 6.0E-10 38 91
PF01393 Chromo_shadow Chromo shadow domain 2.0E-16 182 237
Agabi119p4|110410 PF00628 PHD PHD-finger 9.2E-08 1481 1520
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.3E-06 1566 1617
Agabi119p4|557750 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.2E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.0E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|557900 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.2E-10 1094 1143
Agabi119p4|558000 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 9.7E-38 133 229
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.6E-39 161 263
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.6E-19 377 433
PF00665 rve Integrase core domain 7.1E-12 451 547
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 6.7E-10 747 796
Agabi119p4|563300 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.0E-09 1094 1143
Agabi119p4|564500 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.5E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.0E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|565050 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.8E-14 120 169
Agabi119p4|565500 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.5E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 2.7E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1094 1143
Agabi119p4|565950 PF17921 Integrase_H2C2 Integrase zinc binding domain 1.2E-19 27 83
PF00665 rve Integrase core domain 3.0E-12 101 197
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.6E-10 397 446
Agabi119p4|568200 PF13650 Asp_protease_2 Aspartyl protease 5.6E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.7E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.8E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.0E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 9.1E-18 724 780
PF00665 rve Integrase core domain 9.9E-12 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 1094 1143
Agabi119p4|568450 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 9.5E-23 1 72
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.5E-09 1 38
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.1E-19 165 221
PF00665 rve Integrase core domain 3.3E-12 239 335
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 5.3E-08 535 575
Agabi119p4|583550 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.8E-14 120 169
Agabi119p4|584700 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.7E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|589900 PF13650 Asp_protease_2 Aspartyl protease 6.5E-06 531 614
PF08284 RVP_2 Retroviral aspartyl protease 1.5E-05 533 632
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-19 851 1013
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.0E-16 1079 1167
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.5E-29 1097 1197
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.1E-17 1320 1374
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-08 1705 1753
Agabi119p4|604700 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-13 306 355
Agabi119p4|608450 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.5E-14 149 198
Agabi119p4|608600 PF13650 Asp_protease_2 Aspartyl protease 2.3E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.0E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.2E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.0E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.7E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.8E-19 704 760
PF00665 rve Integrase core domain 3.2E-12 777 874
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 5.7E-09 1074 1123
Agabi119p4|616950 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.8E-10 266 315
Agabi119p4|620900 PF08284 RVP_2 Retroviral aspartyl protease 1.1E-05 575 675
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.6E-06 578 663
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.3E-26 853 1012
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.8E-36 1075 1172
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.5E-36 1100 1206
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.8E-18 1326 1381
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.8E-07 1702 1750
Agabi119p4|637350 PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 8.9E-23 1 72
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.1E-09 1 38
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.8E-19 186 242
PF00665 rve Integrase core domain 1.2E-11 260 356
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.7E-09 556 605
Agabi119p4|637650 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.4E-11 103 152
Agabi119p4|640350 PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 2 97
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.0E-19 220 379
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-37 445 541
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.0E-38 473 575
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.8E-19 689 745
PF00665 rve Integrase core domain 1.1E-11 763 859
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.4E-09 1059 1108
Agabi119p4|641800 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.2E-08 190 230
Agabi119p4|642000 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.0E-28 201 360
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.3E-34 423 518
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-33 448 554
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.3E-19 640 696
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-15 1010 1068
Agabi119p4|643250 PF03732 Retrotrans_gag Retrotransposon gag protein 6.6E-08 143 214
PF00098 zf-CCHC Zinc knuckle 5.7E-05 322 337
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.2E-19 568 727
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.0E-37 793 889
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.8E-38 821 923
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.9E-19 1037 1093
PF00665 rve Integrase core domain 1.6E-09 1111 1207
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-09 1407 1456
Agabi119p4|649550 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.2E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.3E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|654250 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.8E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.2E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.0E-19 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|658350 PF08284 RVP_2 Retroviral aspartyl protease 2.2E-05 123 223
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.1E-22 440 601
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.8E-21 667 770
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.1E-29 699 800
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.8E-17 931 986
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-08 1317 1364
Agabi119p4|667550 PF08284 RVP_2 Retroviral aspartyl protease 4.3E-09 2 97
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 9.8E-19 220 379
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-37 445 541
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.0E-38 473 575
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.9E-19 689 745
PF00665 rve Integrase core domain 1.1E-11 763 859
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 7.6E-10 1059 1108
Agabi119p4|669150 PF13650 Asp_protease_2 Aspartyl protease 3.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.6E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 6.8E-10 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.3E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 1094 1143
Agabi119p4|670400 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.9E-22 803 964
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.9E-24 1030 1133
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.2E-30 1062 1163
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.9E-15 1296 1351
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.1E-06 1674 1721
Agabi119p4|671750 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-10 109 158
Agabi119p4|672750 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-10 220 270
Agabi119p4|672900 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.2E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.0E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|685450 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.0E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.1E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1094 1143
Agabi119p4|687850 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-14 25 74
Agabi119p4|687950 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|689200 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.2E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|689350 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 9.5E-14 302 351
Agabi119p4|689400 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 9.5E-14 302 351
Agabi119p4|694750 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-15 5 90
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.9E-31 154 254
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.1E-34 180 285
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.9E-20 399 457
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.6E-13 771 820
Agabi119p4|694900 PF17921 Integrase_H2C2 Integrase zinc binding domain 1.5E-19 119 175
PF00665 rve Integrase core domain 4.0E-12 193 289
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 7.9E-10 489 538
Agabi119p4|696300 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.9E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.6E-36 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.4E-37 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 1094 1143
Agabi119p4|701300 PF13650 Asp_protease_2 Aspartyl protease 5.9E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.8E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.6E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.4E-19 724 780
PF00665 rve Integrase core domain 4.4E-12 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-07 1094 1134
Agabi119p4|708050 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.3E-10 215 255
Agabi119p4|708800 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.1E-37 133 229
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.5E-38 161 263
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.1E-19 377 433
PF00665 rve Integrase core domain 2.5E-12 451 547
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 7.3E-08 747 787
Agabi119p4|709000 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-10 245 294
Agabi119p4|709250 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.1E-24 82 243
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 9.8E-31 306 406
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.7E-34 332 437
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.5E-20 548 606
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.1E-13 920 969
Agabi119p4|717050 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-11 167 217
Agabi119p4|717400 PF13650 Asp_protease_2 Aspartyl protease 5.7E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.7E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 2.1E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.1E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1094 1143
Agabi119p4|719500 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.6E-11 109 157
Agabi119p4|720800 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.0E-28 201 360
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.3E-34 423 518
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-33 448 554
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.3E-19 640 696
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-15 1010 1068
Agabi119p4|723800 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.4E-11 103 152
Agabi119p4|724200 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.4E-11 103 152
Agabi119p4|724550 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-13 149 197
Agabi119p4|724850 PF17921 Integrase_H2C2 Integrase zinc binding domain 1.5E-19 103 161
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 475 524
Agabi119p4|725200 PF13650 Asp_protease_2 Aspartyl protease 2.3E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.4E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 8.2E-10 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1094 1143
Agabi119p4|725400 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.4E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.0E-19 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.7E-13 1291 1340
Agabi119p4|725850 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.9E-10 253 302
Agabi119p4|729900 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.4E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1094 1143
Agabi119p4|731500 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 9.4E-38 115 211
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-38 143 245
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.4E-19 359 415
PF00665 rve Integrase core domain 5.4E-12 433 529
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 6.7E-10 729 778
Agabi119p4|735450 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 5.2E-14 168 217
Agabi119p4|736000 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.6E-09 167 215
Agabi119p4|740850 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.4E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.1E-33 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|740950 PF13650 Asp_protease_2 Aspartyl protease 8.8E-07 25 114
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.7E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.4E-08 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 5.1E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 1094 1143
Agabi119p4|741150 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 6.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.0E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.0E-09 1094 1143
Agabi119p4|743350 PF13650 Asp_protease_2 Aspartyl protease 7.3E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.8E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 3.4E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.7E-16 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.8E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 4.2E-12 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 6.3E-10 1094 1144
Agabi119p4|743650 PF13650 Asp_protease_2 Aspartyl protease 7.3E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.8E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 3.4E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.5E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.0E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.1E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 1094 1143
Agabi119p4|745750 PF00665 rve Integrase core domain 2.1E-12 25 121
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.7E-10 321 370
Agabi119p4|748300 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.0E-22 826 987
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.6E-24 1053 1156
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.5E-30 1085 1186
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.0E-15 1319 1374
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.1E-06 1697 1744
Agabi119p4|749350 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.8E-14 120 169
Agabi119p4|752250 PF13650 Asp_protease_2 Aspartyl protease 4.0E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.8E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 3.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.9E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.6E-18 724 780
PF00665 rve Integrase core domain 4.4E-12 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.3E-08 1094 1134
Agabi119p4|756950 PF13650 Asp_protease_2 Aspartyl protease 2.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.1E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.0E-18 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.0E-09 1094 1143
Agabi119p4|758450 PF13650 Asp_protease_2 Aspartyl protease 5.3E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 4.5E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 3.2E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.7E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.1E-19 704 760
PF00665 rve Integrase core domain 1.2E-11 778 874
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-07 1074 1114
Agabi119p4|758800 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.8E-14 25 74
Agabi119p4|760950 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.9E-19 73 232
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.3E-37 298 394
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.6E-38 326 428
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.4E-18 542 598
PF00665 rve Integrase core domain 1.2E-11 616 712
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.6E-10 912 961
Agabi119p4|762350 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.8E-37 133 229
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.3E-38 161 263
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.6E-19 377 433
PF00665 rve Integrase core domain 7.1E-12 451 547
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 9.6E-10 747 796
Agabi119p4|762750 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-14 25 74
Agabi119p4|763250 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-14 25 74
Agabi119p4|763650 PF13650 Asp_protease_2 Aspartyl protease 3.4E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.6E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 6.8E-10 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.1E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 1094 1143
Agabi119p4|764450 PF13650 Asp_protease_2 Aspartyl protease 2.6E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.0E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.5E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.9E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.0E-19 724 780
PF00665 rve Integrase core domain 4.4E-12 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-07 1094 1134
Agabi119p4|766200 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.5E-24 450 611
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-30 674 774
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.1E-34 700 805
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-20 919 977
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.4E-13 1291 1340
Agabi119p4|769750 PF08284 RVP_2 Retroviral aspartyl protease 4.1E-09 2 97
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 5.8E-19 220 379
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-37 414 510
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-38 442 544
PF17921 Integrase_H2C2 Integrase zinc binding domain 8.9E-19 658 714
PF00665 rve Integrase core domain 1.1E-11 732 828
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 9.9E-10 1028 1077
Agabi119p4|769900 PF13650 Asp_protease_2 Aspartyl protease 2.3E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.0E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 6.3E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.1E-37 461 557
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.0E-38 489 591
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.1E-19 705 761
PF00665 rve Integrase core domain 1.0E-12 779 875
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.6E-09 1075 1124
Agabi119p4|770050 PF13650 Asp_protease_2 Aspartyl protease 2.6E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 7.8E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.4E-09 33 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-17 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.7E-37 461 557
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-38 489 591
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.6E-19 705 761
PF00665 rve Integrase core domain 5.8E-12 779 875
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-07 1075 1115
Agabi119p4|772400 PF08284 RVP_2 Retroviral aspartyl protease 2.3E-08 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.4E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.3E-36 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.3E-37 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 9.1E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.8E-10 1094 1143
Agabi119p4|773750 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.3E-09 95 222
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.6E-13 514 588
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.1E-52 989 1229
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.5E-24 2025 2186
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.5E-30 2249 2349
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.8E-33 2275 2380
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.4E-19 2494 2552
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.0E-12 2866 2915
Agabi119p4|778800 PF13650 Asp_protease_2 Aspartyl protease 1.0E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 2.3E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 3.0E-10 33 132
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.7E-08 466 506
Agabi119p4|780200 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.3E-14 267 316
Agabi119p4|780250 PF08284 RVP_2 Retroviral aspartyl protease 6.0E-07 433 542
PF13650 Asp_protease_2 Aspartyl protease 6.0E-06 434 525
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-19 714 876
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.3E-25 942 1045
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-31 974 1075
PF17921 Integrase_H2C2 Integrase zinc binding domain 7.6E-14 1200 1255
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 6.6E-07 1586 1633
Agabi119p4|786400 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.4E-23 82 242
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 9.5E-31 306 406
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.8E-34 332 437
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.7E-20 551 609
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.1E-13 923 972

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