Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain62
Total domain count94
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Agabi119p4|003100 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-08 215 289
Agabi119p4|005290 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-11 138 202
Agabi119p4|008460 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-05 10 97
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.3E-16 18 89
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-18 109 179
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-13 234 298
Agabi119p4|009380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-13 88 150
PF13917 zf-CCHC_3 Zinc knuckle 3.2E-06 165 195
PF00098 zf-CCHC Zinc knuckle 4.6E-08 169 185
Agabi119p4|019820 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 8.9E-42 37 158
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-17 219 285
Agabi119p4|030650 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-17 66 138
Agabi119p4|034430 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-16 80 137
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-06 174 239
Agabi119p4|035700 PF05383 La La domain 3.5E-22 30 87
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-07 133 177
PF08777 RRM_3 RNA binding motif 9.2E-06 280 362
Agabi119p4|045880 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-04 132 202
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-06 303 357
Agabi119p4|048400 PF03435 Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain 1.7E-15 8 125
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-10 757 811
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-07 980 1035
Agabi119p4|056130 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-16 5 66
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-11 99 163
Agabi119p4|056600 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.2E-08 7 67
Agabi119p4|056830 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-01 57 151
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-15 75 144
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-19 163 231
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-19 256 324
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-01 257 333
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-20 359 427
PF00658 PABP Poly-adenylate binding protein, unique domain 9.9E-25 627 692
Agabi119p4|057080 PF16367 RRM_7 RNA recognition motif 3.5E-09 10 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-15 11 87
Agabi119p4|059430 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-06 126 197
PF01424 R3H R3H domain 3.5E-10 309 367
Agabi119p4|060870 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-05 108 162
PF01585 G-patch G-patch domain 1.9E-13 638 679
Agabi119p4|060980 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-09 459 511
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-12 583 644
PF00806 PUF Pumilio-family RNA binding repeat 5.3E-01 827 849
PF00806 PUF Pumilio-family RNA binding repeat 6.7E-01 862 888
PF00806 PUF Pumilio-family RNA binding repeat 2.3E-02 905 929
Agabi119p4|061940 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-11 36 111
Agabi119p4|066680 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-07 312 360
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.6E-16 529 593
Agabi119p4|068040 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.6E-06 729 786
Agabi119p4|068210 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-10 112 187
Agabi119p4|068280 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-12 34 80
Agabi119p4|072080 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-16 27 95
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-11 218 289
Agabi119p4|072200 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-18 310 379
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-16 410 479
Agabi119p4|072660 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-13 80 142
PF00098 zf-CCHC Zinc knuckle 3.0E-08 161 177
Agabi119p4|073380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-09 9 80
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-07 170 238
Agabi119p4|073450 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-05 97 128
Agabi119p4|075150 PF05365 UCR_UQCRX_QCR9 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like 5.2E-26 6 57
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-11 79 148
Agabi119p4|075240 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-16 83 152
Agabi119p4|077630 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-14 119 173
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-15 201 251
Agabi119p4|082510 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-12 75 139
Agabi119p4|086520 PF16131 Torus Torus domain 1.7E-38 32 139
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-05 176 229
Agabi119p4|093740 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-15 313 382
Agabi119p4|095380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-13 63 131
Agabi119p4|110570 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-13 60 122
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-20 210 279
Agabi119p4|110910 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 3.2E-29 19 135
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-06 355 406
Agabi119p4|111210 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-14 70 138
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 3.2E-07 166 213
Agabi119p4|111610 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.7E-07 27 91
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-09 121 184
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-21 271 339
Agabi119p4|111660 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-11 57 125
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 7.1E-07 180 214
Agabi119p4|116350 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.5E-09 460 523
PF11764 N-SET COMPASS (Complex proteins associated with Set1p) component N 4.4E-08 1355 1428
PF00856 SET SET domain 1.5E-18 1475 1579
Agabi119p4|554800 PF12937 F-box-like F-box-like 9.2E-12 41 88
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-01 484 590
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.8E-08 505 573
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.5E-07 653 727
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-12 656 718
Agabi119p4|555250 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-16 98 165
Agabi119p4|560250 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-08 197 268
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-19 301 371
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 1.7E-14 390 452
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-08 466 511
Agabi119p4|580400 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.7E-24 5 75
Agabi119p4|610200 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.3E-13 14 84
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-17 101 171
Agabi119p4|620550 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4.8E-27 46 194
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-15 273 342
Agabi119p4|622850 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.5E-08 14 87
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-19 18 84
Agabi119p4|623200 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-14 115 184
Agabi119p4|630250 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-15 88 154
Agabi119p4|639400 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-05 115 186
Agabi119p4|641150 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-15 223 292
Agabi119p4|641450 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 7.0E-24 5 107
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-18 118 186
Agabi119p4|663500 PF07576 BRAP2 BRCA1-associated protein 2 2.1E-26 56 140
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-05 63 123
PF13639 zf-RING_2 Ring finger domain 4.9E-09 164 205
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 8.4E-05 165 204
PF13445 zf-RING_UBOX RING-type zinc-finger 1.0E-05 165 202
PF02148 zf-UBP Zn-finger in ubiquitin-hydrolases and other protein 2.3E-19 239 298
Agabi119p4|682000 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-09 632 693
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-11 706 768
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-15 797 864
Agabi119p4|697400 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-11 112 180
Agabi119p4|698450 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-11 66 133
Agabi119p4|704100 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-13 188 255
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-16 310 378
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-14 469 536
Agabi119p4|713150 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-19 5 75
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 7.5E-29 123 202
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 5.6E-11 302 335
Agabi119p4|739150 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-11 538 599
Agabi119p4|770600 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-14 20 81
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-15 242 307
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-13 442 500
Agabi119p4|783850 PF05729 NACHT NACHT domain 2.6E-10 205 364
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-08 777 850
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.9E-17 1004 1074
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.1E-08 1188 1251
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-08 1303 1379
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-15 1407 1475
Agabi119p4|784100 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-13 5 75

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