Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain45
Total domain count54
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Agabi119p4|001870 PF06068 TIP49 TIP49 P-loop domain 8.5E-157 20 362
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-05 72 121
PF17856 TIP49_C TIP49 AAA-lid domain 8.0E-22 368 433
Agabi119p4|003250 PF13173 AAA_14 AAA domain 6.6E-07 56 152
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-12 57 173
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.5E-08 96 176
PF08542 Rep_fac_C Replication factor C C-terminal domain 9.0E-23 242 328
Agabi119p4|003600 PF06068 TIP49 TIP49 P-loop domain 3.4E-153 29 383
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.4E-07 53 106
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-07 81 134
PF17856 TIP49_C TIP49 AAA-lid domain 3.6E-19 389 454
Agabi119p4|006450 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 3.8E-12 110 160
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-13 218 354
PF17871 AAA_lid_9 AAA lid domain 1.5E-32 362 462
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.1E-47 618 783
PF00158 Sigma54_activat Sigma-54 interaction domain 8.9E-07 621 739
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.9E-08 623 749
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-09 624 742
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 2.5E-21 789 869
Agabi119p4|009750 PF06480 FtsH_ext FtsH Extracellular 1.4E-11 133 230
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.4E-43 333 465
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-12 491 537
PF01434 Peptidase_M41 Peptidase family M41 9.0E-62 552 735
Agabi119p4|013660 PF04212 MIT MIT (microtubule interacting and transport) domain 1.3E-21 7 72
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-40 165 294
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.5E-05 165 233
PF17862 AAA_lid_3 AAA+ lid domain 2.7E-07 319 351
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 3.4E-26 372 432
Agabi119p4|015820 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.5E-05 68 123
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.7E-06 180 251
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-43 181 314
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 5.3E-08 181 292
PF17862 AAA_lid_3 AAA+ lid domain 7.2E-11 338 380
Agabi119p4|031760 PF08740 BCS1_N BCS1 N terminal 1.0E-14 50 219
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.8E-05 254 314
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-15 255 373
Agabi119p4|034500 PF08740 BCS1_N BCS1 N terminal 1.5E-32 41 224
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-16 260 389
Agabi119p4|035500 PF09811 Yae1_N Essential protein Yae1, N terminal 3.5E-09 29 68
PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.1E-07 102 310
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-20 566 705
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.0E-11 566 701
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 2.4E-15 811 896
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 6.6E-44 925 1035
Agabi119p4|038840 PF08740 BCS1_N BCS1 N terminal 9.8E-43 29 214
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-06 250 316
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-05 344 403
Agabi119p4|040530 PF13191 AAA_16 AAA ATPase domain 3.3E-08 157 291
PF13401 AAA_22 AAA domain 4.6E-12 187 288
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-07 189 309
Agabi119p4|043410 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 2.8E-23 117 193
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-10 433 573
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-43 714 840
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-10 867 904
Agabi119p4|045450 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.7E-17 124 243
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-15 157 263
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.3E-05 157 249
PF00158 Sigma54_activat Sigma-54 interaction domain 2.8E-04 211 257
PF16193 AAA_assoc_2 AAA C-terminal domain 8.3E-18 303 374
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 2.8E-58 375 526
Agabi119p4|054410 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.4E-14 271 364
Agabi119p4|055840 PF08740 BCS1_N BCS1 N terminal 2.0E-46 41 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-18 252 372
Agabi119p4|057360 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-42 369 498
PF17862 AAA_lid_3 AAA+ lid domain 3.3E-08 521 564
PF01434 Peptidase_M41 Peptidase family M41 1.5E-56 580 757
Agabi119p4|058110 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.5E-36 733 865
PF17862 AAA_lid_3 AAA+ lid domain 6.3E-08 888 923
Agabi119p4|059610 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.6E-41 250 382
Agabi119p4|060670 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.1E-13 454 586
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-45 719 852
Agabi119p4|061580 PF03215 Rad17 Rad17 P-loop domain 1.5E-07 21 166
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 5.8E-09 42 193
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.3E-15 61 190
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.8E-10 292 357
Agabi119p4|061950 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 6.0E-11 83 138
PF05673 DUF815 Protein of unknown function (DUF815) 5.7E-06 159 261
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.3E-08 195 317
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.1E-44 196 329
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.3E-07 196 289
Agabi119p4|067790 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-39 334 474
PF17862 AAA_lid_3 AAA+ lid domain 6.6E-07 501 546
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.6E-12 615 743
Agabi119p4|069030 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 3.4E-13 213 288
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-09 391 509
PF08519 RFC1 Replication factor RFC1 C terminal domain 1.6E-51 668 823
Agabi119p4|070280 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-20 229 346
Agabi119p4|074840 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.7E-37 137 368
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.7E-05 139 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-14 140 268
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.1E-08 389 445
Agabi119p4|075430 PF13401 AAA_22 AAA domain 3.3E-06 169 270
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-30 171 316
Agabi119p4|083050 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.9E-10 115 169
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-41 228 361
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-10 383 425
Agabi119p4|085600 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.2E-10 29 184
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-05 37 178
Agabi119p4|090250 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 4.5E-16 29 109
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 3.7E-11 130 194
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-46 245 374
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.3E-06 245 340
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.4E-05 245 363
PF17862 AAA_lid_3 AAA+ lid domain 8.7E-13 397 436
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-46 518 651
PF17862 AAA_lid_3 AAA+ lid domain 1.8E-11 674 714
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 5.2E-05 717 769
Agabi119p4|090500 PF08740 BCS1_N BCS1 N terminal 2.6E-43 27 211
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-14 247 389
Agabi119p4|091600 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.5E-10 68 123
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.6E-06 180 301
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.9E-42 181 314
PF17862 AAA_lid_3 AAA+ lid domain 3.8E-10 337 379
Agabi119p4|092120 PF03215 Rad17 Rad17 P-loop domain 6.6E-08 31 104
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.6E-10 53 190
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.8E-18 70 188
PF08542 Rep_fac_C Replication factor C C-terminal domain 4.9E-19 255 340
Agabi119p4|097840 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-43 291 426
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.8E-06 291 415
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-09 450 485
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-39 566 697
PF17862 AAA_lid_3 AAA+ lid domain 3.8E-10 720 764
Agabi119p4|100130 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.4E-06 121 190
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-38 122 250
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-08 273 309
Agabi119p4|101780 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 5.5E-18 111 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-39 244 376
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-11 398 440
Agabi119p4|561250 PF13238 AAA_18 AAA domain 2.6E-29 13 135
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.0E-05 14 52
Agabi119p4|599000 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-04 1275 1353
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.0E-11 1275 1394
Agabi119p4|602650 PF01426 BAH BAH domain 2.4E-11 105 264
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-14 485 637
PF17872 AAA_lid_10 AAA lid domain 2.7E-06 675 710
Agabi119p4|632500 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-41 489 624
PF17862 AAA_lid_3 AAA+ lid domain 1.0E-08 660 695
Agabi119p4|652250 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 9.6E-34 835 1084
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-20 1235 1371
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.8E-07 1235 1368
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 5.3E-67 1534 1743
Agabi119p4|659700 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-10 97 197
PF17871 AAA_lid_9 AAA lid domain 8.4E-32 236 333
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.7E-46 493 661
PF00158 Sigma54_activat Sigma-54 interaction domain 1.4E-05 496 600
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.8E-12 498 610
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-07 499 617
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 6.3E-19 667 747
Agabi119p4|681500 PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.9E-09 409 534
PF17867 AAA_lid_7 Midasin AAA lid domain 2.0E-18 564 687
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.2E-07 761 807
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.7E-08 929 1013
PF17865 AAA_lid_5 Midasin AAA lid domain 1.6E-24 1028 1130
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.8E-20 1199 1336
PF17867 AAA_lid_7 Midasin AAA lid domain 5.2E-12 1348 1440
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.6E-07 1494 1553
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.1E-15 1604 1696
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.1E-15 1876 2015
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-04 1877 1911
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 2.2E-09 1877 2016
PF17867 AAA_lid_7 Midasin AAA lid domain 2.6E-16 2027 2123
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-08 2320 2403
Agabi119p4|699700 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-43 159 291
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 4.6E-07 159 281
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-08 315 353
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-46 521 650
PF17862 AAA_lid_3 AAA+ lid domain 1.4E-10 698 732
Agabi119p4|782650 PF08740 BCS1_N BCS1 N terminal 1.5E-34 121 308
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-16 344 485

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